Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00150 and PGA1_78p00160 are separated by 150 nucleotides PGA1_78p00160 and PGA1_78p00170 are separated by 86 nucleotides
PGA1_78p00150: PGA1_78p00150 - putative HTH-type transcriptional regulator, at 17,834 to 18,874
_78p00150
PGA1_78p00160: PGA1_78p00160 - putative sugar-binding periplasmic protein, at 19,025 to 20,254
_78p00160
PGA1_78p00170: PGA1_78p00170 - putative sn-glycerol-3-phosphate transport system permease protein UgpA, at 20,341 to 21,273
_78p00170
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.452 kb on - strand, within PGA1_78p00150 at 18.683 kb on + strand, within PGA1_78p00150 at 18.844 kb on + strand at 19.070 kb on - strand at 19.276 kb on + strand, within PGA1_78p00160 at 19.414 kb on + strand, within PGA1_78p00160 at 19.414 kb on + strand, within PGA1_78p00160 at 19.461 kb on - strand, within PGA1_78p00160 at 19.464 kb on + strand, within PGA1_78p00160 at 19.579 kb on - strand, within PGA1_78p00160 at 19.812 kb on - strand, within PGA1_78p00160 at 20.114 kb on + strand, within PGA1_78p00160 at 20.132 kb on - strand at 20.226 kb on + strand at 20.593 kb on - strand, within PGA1_78p00170 at 20.735 kb on + strand, within PGA1_78p00170 at 20.828 kb on + strand, within PGA1_78p00170 at 21.104 kb on - strand, within PGA1_78p00170 at 21.172 kb on - strand, within PGA1_78p00170
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 18,452 - PGA1_78p00150 0.59 +2.4 18,683 + PGA1_78p00150 0.82 +0.4 18,844 + +0.8 19,070 - -1.2 19,276 + PGA1_78p00160 0.20 +2.3 19,414 + PGA1_78p00160 0.32 +1.4 19,414 + PGA1_78p00160 0.32 +2.1 19,461 - PGA1_78p00160 0.35 +1.4 19,464 + PGA1_78p00160 0.36 -2.5 19,579 - PGA1_78p00160 0.45 -0.2 19,812 - PGA1_78p00160 0.64 -0.2 20,114 + PGA1_78p00160 0.89 -0.2 20,132 - -0.5 20,226 + +0.4 20,593 - PGA1_78p00170 0.27 +0.5 20,735 + PGA1_78p00170 0.42 -2.5 20,828 + PGA1_78p00170 0.52 +0.0 21,104 - PGA1_78p00170 0.82 -2.2 21,172 - PGA1_78p00170 0.89 -0.2
Or see this region's nucleotide sequence