Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01790 and PGA1_262p01800 overlap by 4 nucleotides PGA1_262p01800 and PGA1_262p01810 are separated by 14 nucleotides PGA1_262p01810 and PGA1_262p01820 overlap by 4 nucleotides
PGA1_262p01790: PGA1_262p01790 - aldehyde dehydrogenase, at 196,111 to 197,562
_262p01790
PGA1_262p01800: PGA1_262p01800 - putative membrane dipeptidase, at 197,559 to 198,536
_262p01800
PGA1_262p01810: PGA1_262p01810 - hypothetical protein, at 198,551 to 200,254
_262p01810
PGA1_262p01820: PGA1_262p01820 - Protein of unknown function (DUF3726)., at 200,251 to 200,901
_262p01820
Position (kb) 198
199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 197.576 kb on + strand at 197.730 kb on - strand, within PGA1_262p01800 at 197.730 kb on - strand, within PGA1_262p01800 at 197.813 kb on + strand, within PGA1_262p01800 at 198.074 kb on + strand, within PGA1_262p01800 at 198.074 kb on + strand, within PGA1_262p01800 at 198.082 kb on - strand, within PGA1_262p01800 at 198.089 kb on - strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.240 kb on + strand, within PGA1_262p01800 at 198.274 kb on + strand, within PGA1_262p01800 at 198.279 kb on + strand, within PGA1_262p01800 at 198.362 kb on - strand, within PGA1_262p01800 at 198.448 kb on + strand at 198.456 kb on - strand at 198.470 kb on + strand at 198.479 kb on + strand at 198.479 kb on + strand at 198.525 kb on + strand at 198.555 kb on - strand at 198.604 kb on + strand at 198.612 kb on - strand at 198.639 kb on + strand at 198.652 kb on - strand at 198.762 kb on + strand, within PGA1_262p01810 at 198.770 kb on - strand, within PGA1_262p01810 at 198.770 kb on - strand, within PGA1_262p01810 at 198.777 kb on + strand, within PGA1_262p01810 at 198.850 kb on - strand, within PGA1_262p01810 at 198.905 kb on + strand, within PGA1_262p01810 at 198.922 kb on + strand, within PGA1_262p01810 at 199.230 kb on - strand, within PGA1_262p01810 at 199.280 kb on - strand, within PGA1_262p01810 at 199.280 kb on - strand, within PGA1_262p01810 at 199.280 kb on - strand, within PGA1_262p01810 at 199.440 kb on - strand, within PGA1_262p01810 at 199.475 kb on + strand, within PGA1_262p01810 at 199.478 kb on - strand, within PGA1_262p01810 at 199.484 kb on - strand, within PGA1_262p01810 at 199.488 kb on - strand, within PGA1_262p01810 at 199.541 kb on + strand, within PGA1_262p01810 at 199.541 kb on + strand, within PGA1_262p01810 at 199.544 kb on - strand, within PGA1_262p01810 at 199.586 kb on - strand, within PGA1_262p01810 at 199.791 kb on + strand, within PGA1_262p01810 at 199.962 kb on + strand, within PGA1_262p01810 at 200.067 kb on + strand, within PGA1_262p01810 at 200.067 kb on + strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.075 kb on - strand, within PGA1_262p01810 at 200.081 kb on + strand, within PGA1_262p01810 at 200.185 kb on + strand at 200.308 kb on + strand at 200.313 kb on + strand at 200.321 kb on - strand, within PGA1_262p01820 at 200.418 kb on + strand, within PGA1_262p01820 at 200.433 kb on + strand, within PGA1_262p01820 at 200.737 kb on - strand, within PGA1_262p01820 at 200.761 kb on + strand, within PGA1_262p01820 at 200.761 kb on + strand, within PGA1_262p01820 at 200.773 kb on + strand, within PGA1_262p01820 at 200.786 kb on - strand, within PGA1_262p01820 at 200.872 kb on - strand at 200.905 kb on + strand at 200.905 kb on + strand at 200.905 kb on + strand at 200.913 kb on - strand at 200.918 kb on - strand at 200.923 kb on + strand at 200.977 kb on + strand at 200.977 kb on + strand at 200.977 kb on + strand at 200.985 kb on - strand at 200.985 kb on - strand at 200.985 kb on - strand at 200.992 kb on + strand at 200.999 kb on + strand at 201.073 kb on + strand at 201.074 kb on - strand at 201.074 kb on - strand at 201.081 kb on - strand at 201.082 kb on - strand at 201.112 kb on - strand at 201.135 kb on + strand at 201.181 kb on + strand at 201.254 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 197,576 + -1.7 197,730 - PGA1_262p01800 0.17 +0.5 197,730 - PGA1_262p01800 0.17 +0.4 197,813 + PGA1_262p01800 0.26 +1.2 198,074 + PGA1_262p01800 0.53 +1.5 198,074 + PGA1_262p01800 0.53 +2.4 198,082 - PGA1_262p01800 0.53 +0.5 198,089 - PGA1_262p01800 0.54 +2.6 198,240 + PGA1_262p01800 0.70 -0.9 198,240 + PGA1_262p01800 0.70 +0.6 198,240 + PGA1_262p01800 0.70 -0.6 198,274 + PGA1_262p01800 0.73 +1.5 198,279 + PGA1_262p01800 0.74 -0.1 198,362 - PGA1_262p01800 0.82 -0.8 198,448 + +0.7 198,456 - -0.2 198,470 + +0.3 198,479 + +0.8 198,479 + -0.5 198,525 + -3.2 198,555 - -1.7 198,604 + +1.3 198,612 - +0.7 198,639 + +0.7 198,652 - +0.5 198,762 + PGA1_262p01810 0.12 +0.8 198,770 - PGA1_262p01810 0.13 +0.1 198,770 - PGA1_262p01810 0.13 +1.1 198,777 + PGA1_262p01810 0.13 +0.6 198,850 - PGA1_262p01810 0.18 -0.9 198,905 + PGA1_262p01810 0.21 -0.8 198,922 + PGA1_262p01810 0.22 -1.7 199,230 - PGA1_262p01810 0.40 -0.5 199,280 - PGA1_262p01810 0.43 -1.2 199,280 - PGA1_262p01810 0.43 +0.6 199,280 - PGA1_262p01810 0.43 +0.1 199,440 - PGA1_262p01810 0.52 -0.4 199,475 + PGA1_262p01810 0.54 -0.1 199,478 - PGA1_262p01810 0.54 +0.7 199,484 - PGA1_262p01810 0.55 -1.5 199,488 - PGA1_262p01810 0.55 -0.2 199,541 + PGA1_262p01810 0.58 -1.0 199,541 + PGA1_262p01810 0.58 -0.8 199,544 - PGA1_262p01810 0.58 +0.6 199,586 - PGA1_262p01810 0.61 -0.2 199,791 + PGA1_262p01810 0.73 -1.2 199,962 + PGA1_262p01810 0.83 -2.9 200,067 + PGA1_262p01810 0.89 -3.2 200,067 + PGA1_262p01810 0.89 -0.1 200,075 - PGA1_262p01810 0.89 -0.9 200,075 - PGA1_262p01810 0.89 -1.5 200,075 - PGA1_262p01810 0.89 +0.1 200,075 - PGA1_262p01810 0.89 +0.5 200,075 - PGA1_262p01810 0.89 -0.7 200,075 - PGA1_262p01810 0.89 +1.9 200,081 + PGA1_262p01810 0.90 +0.2 200,185 + -0.8 200,308 + -1.1 200,313 + +0.1 200,321 - PGA1_262p01820 0.11 +1.1 200,418 + PGA1_262p01820 0.26 +1.8 200,433 + PGA1_262p01820 0.28 -2.1 200,737 - PGA1_262p01820 0.75 -0.9 200,761 + PGA1_262p01820 0.78 -0.2 200,761 + PGA1_262p01820 0.78 +0.1 200,773 + PGA1_262p01820 0.80 +0.1 200,786 - PGA1_262p01820 0.82 -0.9 200,872 - +1.9 200,905 + -1.3 200,905 + -1.4 200,905 + -0.3 200,913 - -0.5 200,918 - +2.1 200,923 + +0.3 200,977 + -0.6 200,977 + -1.5 200,977 + +0.2 200,985 - -0.1 200,985 - +0.8 200,985 - +1.1 200,992 + +0.8 200,999 + +0.7 201,073 + -1.2 201,074 - +1.1 201,074 - -1.3 201,081 - +2.1 201,082 - -1.1 201,112 - -0.7 201,135 + +1.9 201,181 + +0.4 201,254 + +0.1
Or see this region's nucleotide sequence