Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01560

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01550 and PGA1_262p01560 are separated by 121 nucleotidesPGA1_262p01560 and PGA1_262p01570 are separated by 192 nucleotides PGA1_262p01550: PGA1_262p01550 - acyl-CoA dehydrogenase, at 170,329 to 172,101 _262p01550 PGA1_262p01560: PGA1_262p01560 - putative transcriptional regulator, AraC family, at 172,223 to 173,248 _262p01560 PGA1_262p01570: PGA1_262p01570 - Domain of unknown function., at 173,441 to 175,663 _262p01570 Position (kb) 172 173 174Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 171.227 kb on + strand, within PGA1_262p01550at 171.227 kb on + strand, within PGA1_262p01550at 171.309 kb on - strand, within PGA1_262p01550at 171.330 kb on + strand, within PGA1_262p01550at 171.512 kb on - strand, within PGA1_262p01550at 171.790 kb on + strand, within PGA1_262p01550at 171.830 kb on - strand, within PGA1_262p01550at 171.855 kb on + strand, within PGA1_262p01550at 171.855 kb on + strand, within PGA1_262p01550at 171.876 kb on - strand, within PGA1_262p01550at 171.951 kb on + strandat 172.081 kb on + strandat 172.096 kb on + strandat 172.107 kb on + strandat 172.117 kb on + strandat 172.125 kb on - strandat 172.212 kb on - strandat 172.229 kb on - strandat 172.239 kb on - strandat 172.371 kb on - strand, within PGA1_262p01560at 172.391 kb on - strand, within PGA1_262p01560at 172.391 kb on - strand, within PGA1_262p01560at 172.391 kb on - strand, within PGA1_262p01560at 172.401 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.507 kb on + strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.515 kb on - strand, within PGA1_262p01560at 172.640 kb on - strand, within PGA1_262p01560at 172.666 kb on + strand, within PGA1_262p01560at 172.721 kb on + strand, within PGA1_262p01560at 172.729 kb on - strand, within PGA1_262p01560at 172.735 kb on + strand, within PGA1_262p01560at 172.735 kb on + strand, within PGA1_262p01560at 172.735 kb on + strand, within PGA1_262p01560at 172.780 kb on + strand, within PGA1_262p01560at 172.788 kb on - strand, within PGA1_262p01560at 172.788 kb on - strand, within PGA1_262p01560at 172.815 kb on + strand, within PGA1_262p01560at 172.830 kb on - strand, within PGA1_262p01560at 172.855 kb on + strand, within PGA1_262p01560at 173.281 kb on + strandat 173.339 kb on + strandat 173.347 kb on - strandat 173.352 kb on + strandat 173.396 kb on + strandat 173.423 kb on - strandat 173.423 kb on - strandat 173.426 kb on + strandat 173.471 kb on + strandat 173.479 kb on - strandat 173.551 kb on + strandat 173.553 kb on + strandat 173.553 kb on + strandat 173.553 kb on + strandat 173.553 kb on + strandat 173.553 kb on + strandat 173.559 kb on - strandat 173.559 kb on - strandat 173.559 kb on - strandat 173.559 kb on - strandat 173.561 kb on - strandat 173.653 kb on + strandat 173.789 kb on - strand, within PGA1_262p01570at 173.977 kb on - strand, within PGA1_262p01570at 173.977 kb on - strand, within PGA1_262p01570at 174.009 kb on + strand, within PGA1_262p01570at 174.022 kb on - strand, within PGA1_262p01570at 174.024 kb on - strand, within PGA1_262p01570at 174.024 kb on - strand, within PGA1_262p01570at 174.099 kb on + strand, within PGA1_262p01570at 174.245 kb on + strand, within PGA1_262p01570at 174.245 kb on + strand, within PGA1_262p01570

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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171,227 + PGA1_262p01550 0.51 +1.0
171,227 + PGA1_262p01550 0.51 +0.7
171,309 - PGA1_262p01550 0.55 +1.7
171,330 + PGA1_262p01550 0.56 +0.4
171,512 - PGA1_262p01550 0.67 -0.5
171,790 + PGA1_262p01550 0.82 -0.4
171,830 - PGA1_262p01550 0.85 -1.1
171,855 + PGA1_262p01550 0.86 -0.1
171,855 + PGA1_262p01550 0.86 -0.1
171,876 - PGA1_262p01550 0.87 -0.0
171,951 + -1.1
172,081 + +0.6
172,096 + -0.9
172,107 + +0.1
172,117 + -0.1
172,125 - -0.3
172,212 - +1.2
172,229 - -0.0
172,239 - -0.9
172,371 - PGA1_262p01560 0.14 -1.5
172,391 - PGA1_262p01560 0.16 +1.2
172,391 - PGA1_262p01560 0.16 +0.4
172,391 - PGA1_262p01560 0.16 +0.1
172,401 + PGA1_262p01560 0.17 +0.1
172,507 + PGA1_262p01560 0.28 +0.6
172,507 + PGA1_262p01560 0.28 +0.8
172,507 + PGA1_262p01560 0.28 +0.1
172,507 + PGA1_262p01560 0.28 +0.3
172,507 + PGA1_262p01560 0.28 -0.0
172,507 + PGA1_262p01560 0.28 -1.7
172,507 + PGA1_262p01560 0.28 -0.5
172,507 + PGA1_262p01560 0.28 -2.2
172,507 + PGA1_262p01560 0.28 -0.3
172,507 + PGA1_262p01560 0.28 -1.9
172,507 + PGA1_262p01560 0.28 -0.7
172,515 - PGA1_262p01560 0.28 -1.5
172,515 - PGA1_262p01560 0.28 +0.1
172,515 - PGA1_262p01560 0.28 -1.9
172,515 - PGA1_262p01560 0.28 +0.1
172,515 - PGA1_262p01560 0.28 -2.1
172,515 - PGA1_262p01560 0.28 -2.0
172,515 - PGA1_262p01560 0.28 +0.1
172,515 - PGA1_262p01560 0.28 -0.5
172,515 - PGA1_262p01560 0.28 +0.9
172,515 - PGA1_262p01560 0.28 +0.9
172,515 - PGA1_262p01560 0.28 +0.1
172,515 - PGA1_262p01560 0.28 -1.5
172,515 - PGA1_262p01560 0.28 -0.1
172,640 - PGA1_262p01560 0.41 -1.1
172,666 + PGA1_262p01560 0.43 +0.9
172,721 + PGA1_262p01560 0.49 -1.5
172,729 - PGA1_262p01560 0.49 -1.1
172,735 + PGA1_262p01560 0.50 +2.4
172,735 + PGA1_262p01560 0.50 -0.2
172,735 + PGA1_262p01560 0.50 +0.7
172,780 + PGA1_262p01560 0.54 -1.6
172,788 - PGA1_262p01560 0.55 -2.2
172,788 - PGA1_262p01560 0.55 +2.7
172,815 + PGA1_262p01560 0.58 -1.5
172,830 - PGA1_262p01560 0.59 -0.7
172,855 + PGA1_262p01560 0.62 -1.4
173,281 + -0.5
173,339 + +0.9
173,347 - +1.2
173,352 + +0.5
173,396 + -0.4
173,423 - -1.1
173,423 - +1.3
173,426 + +1.5
173,471 + -1.0
173,479 - +1.3
173,551 + -0.8
173,553 + +0.8
173,553 + +0.3
173,553 + +1.3
173,553 + +1.1
173,553 + +0.8
173,559 - -0.9
173,559 - -2.2
173,559 - -0.1
173,559 - -0.3
173,561 - -1.1
173,653 + -0.3
173,789 - PGA1_262p01570 0.16 -2.2
173,977 - PGA1_262p01570 0.24 -0.5
173,977 - PGA1_262p01570 0.24 -0.9
174,009 + PGA1_262p01570 0.26 -0.5
174,022 - PGA1_262p01570 0.26 +0.2
174,024 - PGA1_262p01570 0.26 -2.8
174,024 - PGA1_262p01570 0.26 -0.9
174,099 + PGA1_262p01570 0.30 -1.1
174,245 + PGA1_262p01570 0.36 +0.7
174,245 + PGA1_262p01570 0.36 -0.9

Or see this region's nucleotide sequence