Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01010 and PGA1_262p01020 are separated by 5 nucleotides PGA1_262p01020 and PGA1_262p01030 overlap by 4 nucleotides PGA1_262p01030 and PGA1_262p01040 are separated by 151 nucleotides
PGA1_262p01010: PGA1_262p01010 - dipeptide transport ATP-binding protein DppD, at 110,664 to 111,656
_262p01010
PGA1_262p01020: PGA1_262p01020 - dipeptide transport system permease protein DppC, at 111,662 to 112,609
_262p01020
PGA1_262p01030: PGA1_262p01030 - dipeptide transport system permease protein DppB, at 112,606 to 113,586
_262p01030
PGA1_262p01040: PGA1_262p01040 - periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP), at 113,738 to 115,294
_262p01040
Position (kb)
112
113
114 Strain fitness (log2 ratio)
-2
-1
0
1 at 111.659 kb on + strand at 111.892 kb on + strand, within PGA1_262p01020 at 111.900 kb on - strand, within PGA1_262p01020 at 111.900 kb on - strand, within PGA1_262p01020 at 111.900 kb on - strand, within PGA1_262p01020 at 111.903 kb on - strand, within PGA1_262p01020 at 111.972 kb on - strand, within PGA1_262p01020 at 111.972 kb on - strand, within PGA1_262p01020 at 111.972 kb on - strand, within PGA1_262p01020 at 112.018 kb on + strand, within PGA1_262p01020 at 112.018 kb on + strand, within PGA1_262p01020 at 112.018 kb on + strand, within PGA1_262p01020 at 112.026 kb on - strand, within PGA1_262p01020 at 112.115 kb on + strand, within PGA1_262p01020 at 112.127 kb on - strand, within PGA1_262p01020 at 112.213 kb on + strand, within PGA1_262p01020 at 112.311 kb on + strand, within PGA1_262p01020 at 112.355 kb on + strand, within PGA1_262p01020 at 112.399 kb on + strand, within PGA1_262p01020 at 112.439 kb on - strand, within PGA1_262p01020 at 112.506 kb on - strand, within PGA1_262p01020 at 112.521 kb on + strand at 112.688 kb on - strand at 112.728 kb on - strand, within PGA1_262p01030 at 112.802 kb on + strand, within PGA1_262p01030 at 112.802 kb on + strand, within PGA1_262p01030 at 113.099 kb on - strand, within PGA1_262p01030 at 113.297 kb on - strand, within PGA1_262p01030 at 113.511 kb on - strand at 113.654 kb on + strand at 113.715 kb on - strand at 113.771 kb on + strand at 113.817 kb on + strand at 113.817 kb on + strand at 113.817 kb on + strand at 113.817 kb on + strand at 113.827 kb on + strand at 113.827 kb on + strand at 113.875 kb on + strand at 113.956 kb on + strand, within PGA1_262p01040 at 113.981 kb on - strand, within PGA1_262p01040 at 114.009 kb on - strand, within PGA1_262p01040 at 114.099 kb on - strand, within PGA1_262p01040 at 114.125 kb on + strand, within PGA1_262p01040
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 111,659 + +0.8 111,892 + PGA1_262p01020 0.24 -0.9 111,900 - PGA1_262p01020 0.25 -0.0 111,900 - PGA1_262p01020 0.25 -0.3 111,900 - PGA1_262p01020 0.25 +0.9 111,903 - PGA1_262p01020 0.25 +0.1 111,972 - PGA1_262p01020 0.33 -1.0 111,972 - PGA1_262p01020 0.33 -1.1 111,972 - PGA1_262p01020 0.33 -0.5 112,018 + PGA1_262p01020 0.38 +1.5 112,018 + PGA1_262p01020 0.38 -0.3 112,018 + PGA1_262p01020 0.38 +0.8 112,026 - PGA1_262p01020 0.38 -0.4 112,115 + PGA1_262p01020 0.48 -0.3 112,127 - PGA1_262p01020 0.49 +0.1 112,213 + PGA1_262p01020 0.58 +0.1 112,311 + PGA1_262p01020 0.68 +0.5 112,355 + PGA1_262p01020 0.73 -1.2 112,399 + PGA1_262p01020 0.78 +1.3 112,439 - PGA1_262p01020 0.82 -0.0 112,506 - PGA1_262p01020 0.89 +0.3 112,521 + -0.5 112,688 - -0.2 112,728 - PGA1_262p01030 0.12 -0.8 112,802 + PGA1_262p01030 0.20 -2.4 112,802 + PGA1_262p01030 0.20 -0.5 113,099 - PGA1_262p01030 0.50 -2.6 113,297 - PGA1_262p01030 0.70 -0.4 113,511 - +0.1 113,654 + -0.9 113,715 - +0.1 113,771 + +1.4 113,817 + -1.0 113,817 + +1.7 113,817 + +0.4 113,817 + -0.7 113,827 + -2.2 113,827 + +1.4 113,875 + -0.3 113,956 + PGA1_262p01040 0.14 +0.1 113,981 - PGA1_262p01040 0.16 -0.1 114,009 - PGA1_262p01040 0.17 +0.5 114,099 - PGA1_262p01040 0.23 +0.4 114,125 + PGA1_262p01040 0.25 +0.4
Or see this region's nucleotide sequence