Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00600 and PGA1_262p00610 are separated by 127 nucleotides PGA1_262p00610 and PGA1_262p00620 are separated by 132 nucleotides PGA1_262p00620 and PGA1_262p00630 are separated by 81 nucleotides
PGA1_262p00600: PGA1_262p00600 - Bacterial putative lipoprotein (DUF940)., at 68,854 to 70,983
_262p00600
PGA1_262p00610: PGA1_262p00610 - metallophosphoesterase, at 71,111 to 71,839
_262p00610
PGA1_262p00620: PGA1_262p00620 - hypothetical protein, at 71,972 to 72,625
_262p00620
PGA1_262p00630: PGA1_262p00630 - Predicted membrane protein, at 72,707 to 73,756
_262p00630
Position (kb) 71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 71.025 kb on + strand at 71.037 kb on + strand at 71.037 kb on + strand at 71.037 kb on + strand at 71.043 kb on - strand at 71.047 kb on + strand at 71.092 kb on - strand at 71.169 kb on + strand at 71.169 kb on + strand at 71.177 kb on - strand at 71.302 kb on - strand, within PGA1_262p00610 at 71.448 kb on + strand, within PGA1_262p00610 at 71.513 kb on - strand, within PGA1_262p00610 at 71.650 kb on + strand, within PGA1_262p00610 at 72.183 kb on - strand, within PGA1_262p00620 at 72.218 kb on - strand, within PGA1_262p00620 at 72.237 kb on - strand, within PGA1_262p00620 at 72.271 kb on + strand, within PGA1_262p00620 at 72.361 kb on + strand, within PGA1_262p00620 at 72.369 kb on - strand, within PGA1_262p00620 at 72.502 kb on + strand, within PGA1_262p00620 at 72.502 kb on + strand, within PGA1_262p00620 at 72.510 kb on - strand, within PGA1_262p00620 at 72.531 kb on + strand, within PGA1_262p00620 at 72.536 kb on + strand, within PGA1_262p00620 at 72.549 kb on + strand, within PGA1_262p00620 at 72.556 kb on + strand, within PGA1_262p00620 at 72.591 kb on + strand at 72.792 kb on + strand at 72.794 kb on - strand at 72.805 kb on - strand at 72.906 kb on + strand, within PGA1_262p00630 at 72.996 kb on + strand, within PGA1_262p00630 at 73.148 kb on + strand, within PGA1_262p00630 at 73.150 kb on - strand, within PGA1_262p00630 at 73.203 kb on - strand, within PGA1_262p00630 at 73.227 kb on + strand, within PGA1_262p00630 at 73.236 kb on - strand, within PGA1_262p00630 at 73.236 kb on - strand, within PGA1_262p00630 at 73.236 kb on - strand, within PGA1_262p00630 at 73.252 kb on + strand, within PGA1_262p00630 at 73.253 kb on - strand, within PGA1_262p00630 at 73.288 kb on + strand, within PGA1_262p00630 at 73.289 kb on - strand, within PGA1_262p00630 at 73.296 kb on - strand, within PGA1_262p00630 at 73.298 kb on + strand, within PGA1_262p00630 at 73.298 kb on + strand, within PGA1_262p00630 at 73.299 kb on + strand, within PGA1_262p00630 at 73.299 kb on + strand, within PGA1_262p00630 at 73.306 kb on - strand, within PGA1_262p00630 at 73.409 kb on + strand, within PGA1_262p00630 at 73.409 kb on + strand, within PGA1_262p00630 at 73.540 kb on + strand, within PGA1_262p00630 at 73.548 kb on - strand, within PGA1_262p00630 at 73.617 kb on - strand, within PGA1_262p00630 at 73.617 kb on - strand, within PGA1_262p00630
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 71,025 + +0.4 71,037 + +0.1 71,037 + -0.4 71,037 + -0.8 71,043 - +0.9 71,047 + +0.5 71,092 - +1.5 71,169 + +0.2 71,169 + +0.5 71,177 - -0.8 71,302 - PGA1_262p00610 0.26 +0.7 71,448 + PGA1_262p00610 0.46 -0.2 71,513 - PGA1_262p00610 0.55 -0.7 71,650 + PGA1_262p00610 0.74 -1.5 72,183 - PGA1_262p00620 0.32 -2.7 72,218 - PGA1_262p00620 0.38 -1.1 72,237 - PGA1_262p00620 0.41 -0.1 72,271 + PGA1_262p00620 0.46 +0.3 72,361 + PGA1_262p00620 0.59 -0.8 72,369 - PGA1_262p00620 0.61 +0.4 72,502 + PGA1_262p00620 0.81 -0.8 72,502 + PGA1_262p00620 0.81 -3.5 72,510 - PGA1_262p00620 0.82 -0.6 72,531 + PGA1_262p00620 0.85 +0.4 72,536 + PGA1_262p00620 0.86 -0.7 72,549 + PGA1_262p00620 0.88 -0.8 72,556 + PGA1_262p00620 0.89 -3.2 72,591 + -0.1 72,792 + -1.1 72,794 - +0.4 72,805 - -0.2 72,906 + PGA1_262p00630 0.19 -0.8 72,996 + PGA1_262p00630 0.28 +1.3 73,148 + PGA1_262p00630 0.42 +0.8 73,150 - PGA1_262p00630 0.42 +1.0 73,203 - PGA1_262p00630 0.47 -0.9 73,227 + PGA1_262p00630 0.50 +0.6 73,236 - PGA1_262p00630 0.50 -0.4 73,236 - PGA1_262p00630 0.50 +0.3 73,236 - PGA1_262p00630 0.50 +0.1 73,252 + PGA1_262p00630 0.52 -0.9 73,253 - PGA1_262p00630 0.52 -0.2 73,288 + PGA1_262p00630 0.55 +0.4 73,289 - PGA1_262p00630 0.55 -1.1 73,296 - PGA1_262p00630 0.56 +0.4 73,298 + PGA1_262p00630 0.56 -0.1 73,298 + PGA1_262p00630 0.56 +1.4 73,299 + PGA1_262p00630 0.56 +0.5 73,299 + PGA1_262p00630 0.56 -1.1 73,306 - PGA1_262p00630 0.57 -0.1 73,409 + PGA1_262p00630 0.67 -0.1 73,409 + PGA1_262p00630 0.67 +1.3 73,540 + PGA1_262p00630 0.79 +0.9 73,548 - PGA1_262p00630 0.80 -1.1 73,617 - PGA1_262p00630 0.87 +0.9 73,617 - PGA1_262p00630 0.87 -1.7
Or see this region's nucleotide sequence