Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00100 and PGA1_262p00110 are separated by 4 nucleotides PGA1_262p00110 and PGA1_262p00120 are separated by 3 nucleotides
PGA1_262p00100: PGA1_262p00100 - putative glycosyl transferase, at 12,316 to 13,404
_262p00100
PGA1_262p00110: PGA1_262p00110 - putative glycosyl transferase, at 13,409 to 14,362
_262p00110
PGA1_262p00120: PGA1_262p00120 - succinoglycan biosynthesis protein ExoL, at 14,366 to 15,547
_262p00120
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.554 kb on + strand, within PGA1_262p00100 at 12.644 kb on + strand, within PGA1_262p00100 at 12.644 kb on + strand, within PGA1_262p00100 at 12.853 kb on + strand, within PGA1_262p00100 at 12.860 kb on - strand, within PGA1_262p00100 at 12.942 kb on + strand, within PGA1_262p00100 at 13.045 kb on + strand, within PGA1_262p00100 at 13.052 kb on + strand, within PGA1_262p00100 at 13.200 kb on + strand, within PGA1_262p00100 at 13.200 kb on + strand, within PGA1_262p00100 at 13.208 kb on - strand, within PGA1_262p00100 at 13.220 kb on - strand, within PGA1_262p00100 at 13.280 kb on + strand, within PGA1_262p00100 at 13.280 kb on + strand, within PGA1_262p00100 at 13.285 kb on + strand, within PGA1_262p00100 at 13.293 kb on - strand, within PGA1_262p00100 at 13.314 kb on - strand at 13.314 kb on - strand at 13.548 kb on + strand, within PGA1_262p00110 at 13.600 kb on - strand, within PGA1_262p00110 at 13.750 kb on - strand, within PGA1_262p00110 at 13.750 kb on - strand, within PGA1_262p00110 at 13.796 kb on - strand, within PGA1_262p00110 at 13.825 kb on - strand, within PGA1_262p00110 at 13.844 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.864 kb on + strand, within PGA1_262p00110 at 13.889 kb on + strand, within PGA1_262p00110 at 13.935 kb on - strand, within PGA1_262p00110 at 13.985 kb on + strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.111 kb on + strand, within PGA1_262p00110 at 14.111 kb on + strand, within PGA1_262p00110 at 14.119 kb on - strand, within PGA1_262p00110 at 14.273 kb on - strand at 14.286 kb on + strand at 14.356 kb on + strand at 14.396 kb on - strand at 14.505 kb on + strand, within PGA1_262p00120 at 14.513 kb on - strand, within PGA1_262p00120 at 14.566 kb on - strand, within PGA1_262p00120 at 14.762 kb on + strand, within PGA1_262p00120 at 14.770 kb on - strand, within PGA1_262p00120 at 14.840 kb on + strand, within PGA1_262p00120 at 14.859 kb on + strand, within PGA1_262p00120 at 14.867 kb on - strand, within PGA1_262p00120 at 14.937 kb on - strand, within PGA1_262p00120 at 15.003 kb on + strand, within PGA1_262p00120 at 15.037 kb on - strand, within PGA1_262p00120 at 15.037 kb on - strand, within PGA1_262p00120 at 15.130 kb on - strand, within PGA1_262p00120 at 15.295 kb on - strand, within PGA1_262p00120 at 15.331 kb on + strand, within PGA1_262p00120 at 15.331 kb on + strand, within PGA1_262p00120 at 15.357 kb on + strand, within PGA1_262p00120
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 12,554 + PGA1_262p00100 0.22 +1.3 12,644 + PGA1_262p00100 0.30 +1.0 12,644 + PGA1_262p00100 0.30 -0.5 12,853 + PGA1_262p00100 0.49 +1.9 12,860 - PGA1_262p00100 0.50 -0.5 12,942 + PGA1_262p00100 0.57 +2.7 13,045 + PGA1_262p00100 0.67 -1.9 13,052 + PGA1_262p00100 0.68 +0.1 13,200 + PGA1_262p00100 0.81 +0.1 13,200 + PGA1_262p00100 0.81 +0.1 13,208 - PGA1_262p00100 0.82 +1.4 13,220 - PGA1_262p00100 0.83 +1.7 13,280 + PGA1_262p00100 0.89 +0.1 13,280 + PGA1_262p00100 0.89 +1.1 13,285 + PGA1_262p00100 0.89 +0.3 13,293 - PGA1_262p00100 0.90 -0.9 13,314 - +1.1 13,314 - +0.8 13,548 + PGA1_262p00110 0.15 +0.5 13,600 - PGA1_262p00110 0.20 +1.3 13,750 - PGA1_262p00110 0.36 +0.7 13,750 - PGA1_262p00110 0.36 -0.4 13,796 - PGA1_262p00110 0.41 +1.2 13,825 - PGA1_262p00110 0.44 +1.7 13,844 + PGA1_262p00110 0.46 +0.4 13,854 + PGA1_262p00110 0.47 -0.6 13,854 + PGA1_262p00110 0.47 +0.8 13,854 + PGA1_262p00110 0.47 +0.9 13,864 + PGA1_262p00110 0.48 +0.3 13,889 + PGA1_262p00110 0.50 +2.2 13,935 - PGA1_262p00110 0.55 +2.4 13,985 + PGA1_262p00110 0.60 +0.8 14,039 - PGA1_262p00110 0.66 -0.9 14,039 - PGA1_262p00110 0.66 -1.5 14,039 - PGA1_262p00110 0.66 +0.8 14,039 - PGA1_262p00110 0.66 -1.0 14,111 + PGA1_262p00110 0.74 -0.0 14,111 + PGA1_262p00110 0.74 +0.6 14,119 - PGA1_262p00110 0.74 +0.5 14,273 - +0.3 14,286 + +1.4 14,356 + -0.3 14,396 - -1.5 14,505 + PGA1_262p00120 0.12 +0.3 14,513 - PGA1_262p00120 0.12 -0.2 14,566 - PGA1_262p00120 0.17 +1.2 14,762 + PGA1_262p00120 0.34 -0.1 14,770 - PGA1_262p00120 0.34 -0.9 14,840 + PGA1_262p00120 0.40 -0.9 14,859 + PGA1_262p00120 0.42 -0.5 14,867 - PGA1_262p00120 0.42 -0.4 14,937 - PGA1_262p00120 0.48 +0.6 15,003 + PGA1_262p00120 0.54 -1.9 15,037 - PGA1_262p00120 0.57 -1.9 15,037 - PGA1_262p00120 0.57 +0.1 15,130 - PGA1_262p00120 0.65 +0.6 15,295 - PGA1_262p00120 0.79 +1.9 15,331 + PGA1_262p00120 0.82 +0.7 15,331 + PGA1_262p00120 0.82 +0.1 15,357 + PGA1_262p00120 0.84 +0.1
Or see this region's nucleotide sequence