Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03660 and PGA1_c03670 are separated by 109 nucleotides PGA1_c03670 and PGA1_c03680 are separated by 383 nucleotides
PGA1_c03660: PGA1_c03660 - Predicted permeases, at 353,551 to 354,306
_c03660
PGA1_c03670: PGA1_c03670 - hypothetical protein, at 354,416 to 354,745
_c03670
PGA1_c03680: PGA1_c03680 - (3S)-malyl-CoA thioesterase [EC:3.1.2.30] <small>(from data)</small>, at 355,129 to 355,983
_c03680
Position (kb) 354
355 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 353.433 kb on - strand at 353.465 kb on + strand at 353.470 kb on + strand at 353.477 kb on + strand at 353.479 kb on + strand at 353.487 kb on - strand at 353.487 kb on - strand at 353.489 kb on + strand at 353.489 kb on + strand at 353.489 kb on + strand at 353.495 kb on - strand at 353.497 kb on - strand at 353.497 kb on - strand at 353.497 kb on - strand at 353.497 kb on - strand at 353.498 kb on + strand at 353.498 kb on + strand at 353.498 kb on + strand at 353.506 kb on - strand at 353.506 kb on - strand at 353.566 kb on - strand at 353.600 kb on + strand at 353.632 kb on - strand, within PGA1_c03660 at 353.635 kb on + strand, within PGA1_c03660 at 353.635 kb on + strand, within PGA1_c03660 at 353.686 kb on - strand, within PGA1_c03660 at 353.695 kb on + strand, within PGA1_c03660 at 353.695 kb on + strand, within PGA1_c03660 at 353.701 kb on + strand, within PGA1_c03660 at 353.718 kb on - strand, within PGA1_c03660 at 353.745 kb on + strand, within PGA1_c03660 at 353.750 kb on - strand, within PGA1_c03660 at 353.750 kb on - strand, within PGA1_c03660 at 353.788 kb on - strand, within PGA1_c03660 at 353.810 kb on + strand, within PGA1_c03660 at 353.829 kb on - strand, within PGA1_c03660 at 353.844 kb on - strand, within PGA1_c03660 at 353.848 kb on + strand, within PGA1_c03660 at 353.901 kb on + strand, within PGA1_c03660 at 353.901 kb on + strand, within PGA1_c03660 at 353.918 kb on - strand, within PGA1_c03660 at 353.928 kb on - strand, within PGA1_c03660 at 354.023 kb on + strand, within PGA1_c03660 at 354.067 kb on + strand, within PGA1_c03660 at 354.067 kb on + strand, within PGA1_c03660 at 354.075 kb on - strand, within PGA1_c03660 at 354.076 kb on + strand, within PGA1_c03660 at 354.093 kb on + strand, within PGA1_c03660 at 354.131 kb on + strand, within PGA1_c03660 at 354.168 kb on - strand, within PGA1_c03660 at 354.175 kb on + strand, within PGA1_c03660 at 354.176 kb on + strand, within PGA1_c03660 at 354.176 kb on + strand, within PGA1_c03660 at 354.184 kb on - strand, within PGA1_c03660 at 354.186 kb on + strand, within PGA1_c03660 at 354.186 kb on + strand, within PGA1_c03660 at 354.194 kb on - strand, within PGA1_c03660 at 354.194 kb on - strand, within PGA1_c03660 at 354.221 kb on + strand, within PGA1_c03660 at 354.222 kb on - strand, within PGA1_c03660 at 354.222 kb on - strand, within PGA1_c03660 at 354.229 kb on - strand, within PGA1_c03660 at 354.244 kb on + strand at 354.252 kb on - strand at 354.285 kb on + strand at 354.285 kb on + strand at 354.295 kb on + strand at 354.295 kb on + strand at 354.295 kb on + strand at 354.298 kb on - strand at 354.300 kb on + strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.303 kb on - strand at 354.308 kb on - strand at 354.308 kb on - strand at 354.318 kb on - strand at 354.355 kb on - strand at 354.379 kb on - strand at 354.385 kb on + strand at 354.392 kb on + strand at 354.393 kb on - strand at 354.393 kb on - strand at 354.422 kb on - strand at 354.428 kb on + strand at 354.436 kb on - strand at 354.438 kb on + strand at 354.438 kb on + strand at 354.438 kb on + strand at 354.438 kb on + strand at 354.438 kb on + strand at 354.446 kb on - strand at 354.446 kb on - strand at 354.446 kb on - strand at 354.464 kb on + strand, within PGA1_c03670 at 354.469 kb on + strand, within PGA1_c03670 at 354.472 kb on - strand, within PGA1_c03670 at 354.511 kb on + strand, within PGA1_c03670 at 354.605 kb on + strand, within PGA1_c03670 at 354.605 kb on + strand, within PGA1_c03670 at 354.613 kb on - strand, within PGA1_c03670 at 354.651 kb on + strand, within PGA1_c03670 at 354.656 kb on + strand, within PGA1_c03670 at 354.661 kb on + strand, within PGA1_c03670 at 354.674 kb on - strand, within PGA1_c03670 at 354.692 kb on - strand, within PGA1_c03670 at 354.708 kb on + strand, within PGA1_c03670 at 354.708 kb on + strand, within PGA1_c03670 at 354.710 kb on + strand, within PGA1_c03670 at 354.710 kb on + strand, within PGA1_c03670 at 354.710 kb on + strand, within PGA1_c03670 at 354.710 kb on + strand, within PGA1_c03670 at 354.716 kb on - strand at 354.718 kb on - strand at 354.718 kb on - strand at 354.718 kb on - strand at 354.718 kb on - strand at 354.755 kb on - strand at 354.755 kb on - strand at 354.756 kb on - strand at 354.777 kb on + strand at 354.784 kb on + strand at 354.786 kb on - strand at 354.786 kb on - strand at 354.799 kb on + strand at 354.802 kb on - strand at 354.807 kb on - strand at 354.807 kb on - strand at 354.807 kb on - strand at 354.812 kb on - strand at 354.815 kb on + strand at 354.857 kb on + strand at 354.860 kb on - strand at 354.865 kb on - strand at 354.865 kb on - strand at 354.915 kb on - strand at 354.940 kb on + strand at 354.948 kb on - strand at 354.957 kb on + strand at 355.135 kb on - strand at 355.159 kb on + strand at 355.276 kb on + strand, within PGA1_c03680 at 355.291 kb on - strand, within PGA1_c03680 at 355.312 kb on - strand, within PGA1_c03680 at 355.323 kb on + strand, within PGA1_c03680 at 355.357 kb on + strand, within PGA1_c03680 at 355.416 kb on + strand, within PGA1_c03680 at 355.416 kb on + strand, within PGA1_c03680 at 355.471 kb on - strand, within PGA1_c03680 at 355.488 kb on + strand, within PGA1_c03680 at 355.488 kb on + strand, within PGA1_c03680 at 355.496 kb on - strand, within PGA1_c03680 at 355.496 kb on - strand, within PGA1_c03680 at 355.517 kb on - strand, within PGA1_c03680 at 355.610 kb on + strand, within PGA1_c03680 at 355.641 kb on - strand, within PGA1_c03680 at 355.684 kb on - strand, within PGA1_c03680 at 355.693 kb on + strand, within PGA1_c03680 at 355.694 kb on - strand, within PGA1_c03680 at 355.705 kb on + strand, within PGA1_c03680 at 355.712 kb on + strand, within PGA1_c03680 at 355.721 kb on - strand, within PGA1_c03680 at 355.721 kb on - strand, within PGA1_c03680
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 353,433 - -1.0 353,465 + +0.7 353,470 + +1.0 353,477 + -0.0 353,479 + -0.6 353,487 - -0.1 353,487 - +0.4 353,489 + +1.0 353,489 + +0.5 353,489 + +0.1 353,495 - +0.8 353,497 - -0.7 353,497 - +0.2 353,497 - -1.0 353,497 - +2.6 353,498 + +0.0 353,498 + -2.7 353,498 + -2.7 353,506 - +1.0 353,506 - +1.0 353,566 - +0.8 353,600 + -1.0 353,632 - PGA1_c03660 0.11 -0.3 353,635 + PGA1_c03660 0.11 -0.3 353,635 + PGA1_c03660 0.11 -0.2 353,686 - PGA1_c03660 0.18 -0.0 353,695 + PGA1_c03660 0.19 +1.7 353,695 + PGA1_c03660 0.19 +0.5 353,701 + PGA1_c03660 0.20 +0.6 353,718 - PGA1_c03660 0.22 +0.4 353,745 + PGA1_c03660 0.26 +1.6 353,750 - PGA1_c03660 0.26 +1.0 353,750 - PGA1_c03660 0.26 -1.0 353,788 - PGA1_c03660 0.31 -0.8 353,810 + PGA1_c03660 0.34 -0.4 353,829 - PGA1_c03660 0.37 +1.2 353,844 - PGA1_c03660 0.39 -0.6 353,848 + PGA1_c03660 0.39 +1.6 353,901 + PGA1_c03660 0.46 -0.0 353,901 + PGA1_c03660 0.46 +0.5 353,918 - PGA1_c03660 0.49 +2.3 353,928 - PGA1_c03660 0.50 +1.4 354,023 + PGA1_c03660 0.62 +1.7 354,067 + PGA1_c03660 0.68 +1.0 354,067 + PGA1_c03660 0.68 -0.5 354,075 - PGA1_c03660 0.69 +0.6 354,076 + PGA1_c03660 0.69 -1.3 354,093 + PGA1_c03660 0.72 +1.5 354,131 + PGA1_c03660 0.77 -0.3 354,168 - PGA1_c03660 0.82 +0.5 354,175 + PGA1_c03660 0.83 -0.2 354,176 + PGA1_c03660 0.83 -1.2 354,176 + PGA1_c03660 0.83 +2.9 354,184 - PGA1_c03660 0.84 +0.6 354,186 + PGA1_c03660 0.84 +0.9 354,186 + PGA1_c03660 0.84 +0.7 354,194 - PGA1_c03660 0.85 +1.4 354,194 - PGA1_c03660 0.85 +1.7 354,221 + PGA1_c03660 0.89 -2.2 354,222 - PGA1_c03660 0.89 -0.1 354,222 - PGA1_c03660 0.89 +2.0 354,229 - PGA1_c03660 0.90 -0.3 354,244 + +0.4 354,252 - +1.2 354,285 + +0.3 354,285 + +1.2 354,295 + +1.0 354,295 + -0.8 354,295 + -2.0 354,298 - -0.6 354,300 + -2.3 354,303 - +1.0 354,303 - +0.9 354,303 - -0.7 354,303 - -0.8 354,303 - -0.2 354,303 - -1.6 354,308 - +0.4 354,308 - -0.2 354,318 - -1.2 354,355 - +0.1 354,379 - -1.8 354,385 + +0.1 354,392 + -0.0 354,393 - +0.3 354,393 - -1.0 354,422 - -0.9 354,428 + +0.2 354,436 - +0.6 354,438 + +0.1 354,438 + +1.1 354,438 + -1.6 354,438 + +0.3 354,438 + -0.9 354,446 - +0.7 354,446 - -0.4 354,446 - -3.1 354,464 + PGA1_c03670 0.15 +1.3 354,469 + PGA1_c03670 0.16 -0.9 354,472 - PGA1_c03670 0.17 +0.2 354,511 + PGA1_c03670 0.29 -1.0 354,605 + PGA1_c03670 0.57 +1.0 354,605 + PGA1_c03670 0.57 -0.6 354,613 - PGA1_c03670 0.60 +0.8 354,651 + PGA1_c03670 0.71 +0.3 354,656 + PGA1_c03670 0.73 -1.2 354,661 + PGA1_c03670 0.74 +0.5 354,674 - PGA1_c03670 0.78 +4.4 354,692 - PGA1_c03670 0.84 -0.2 354,708 + PGA1_c03670 0.88 +1.2 354,708 + PGA1_c03670 0.88 -0.2 354,710 + PGA1_c03670 0.89 +0.8 354,710 + PGA1_c03670 0.89 +0.5 354,710 + PGA1_c03670 0.89 +1.7 354,710 + PGA1_c03670 0.89 -0.0 354,716 - +1.0 354,718 - +0.5 354,718 - +0.3 354,718 - -0.6 354,718 - +0.2 354,755 - +0.4 354,755 - -0.3 354,756 - -1.5 354,777 + +0.7 354,784 + +1.3 354,786 - -0.3 354,786 - +2.0 354,799 + +1.0 354,802 - -2.7 354,807 - +1.7 354,807 - +1.3 354,807 - +1.8 354,812 - -2.0 354,815 + -2.2 354,857 + -1.0 354,860 - +2.6 354,865 - +1.1 354,865 - +0.9 354,915 - +0.4 354,940 + -1.8 354,948 - -0.3 354,957 + -0.2 355,135 - -3.3 355,159 + +0.8 355,276 + PGA1_c03680 0.17 -2.1 355,291 - PGA1_c03680 0.19 +1.6 355,312 - PGA1_c03680 0.21 +1.0 355,323 + PGA1_c03680 0.23 +0.4 355,357 + PGA1_c03680 0.27 -0.8 355,416 + PGA1_c03680 0.34 -0.4 355,416 + PGA1_c03680 0.34 -0.0 355,471 - PGA1_c03680 0.40 +2.6 355,488 + PGA1_c03680 0.42 +0.1 355,488 + PGA1_c03680 0.42 -0.1 355,496 - PGA1_c03680 0.43 +0.3 355,496 - PGA1_c03680 0.43 -1.0 355,517 - PGA1_c03680 0.45 +1.1 355,610 + PGA1_c03680 0.56 +0.3 355,641 - PGA1_c03680 0.60 +0.6 355,684 - PGA1_c03680 0.65 -0.6 355,693 + PGA1_c03680 0.66 +1.0 355,694 - PGA1_c03680 0.66 -1.3 355,705 + PGA1_c03680 0.67 +0.5 355,712 + PGA1_c03680 0.68 -0.7 355,721 - PGA1_c03680 0.69 +3.6 355,721 - PGA1_c03680 0.69 +1.3
Or see this region's nucleotide sequence