Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02940 and PGA1_c02950 are separated by 11 nucleotides PGA1_c02950 and PGA1_c02960 overlap by 4 nucleotides PGA1_c02960 and PGA1_c02970 overlap by 4 nucleotides
PGA1_c02940: PGA1_c02940 - 4-hydroxybenzoate octaprenyltransferase UbiA, at 283,519 to 284,481
_c02940
PGA1_c02950: PGA1_c02950 - RNA methyltransferase-like protein, at 284,493 to 285,221
_c02950
PGA1_c02960: PGA1_c02960 - Predicted acetyltransferase, at 285,218 to 286,126
_c02960
PGA1_c02970: PGA1_c02970 - hypothetical protein, at 286,123 to 286,650
_c02970
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2 at 284.528 kb on + strand at 284.538 kb on + strand at 284.550 kb on + strand at 284.558 kb on - strand at 284.601 kb on + strand, within PGA1_c02950 at 284.621 kb on + strand, within PGA1_c02950 at 284.633 kb on + strand, within PGA1_c02950 at 284.639 kb on - strand, within PGA1_c02950 at 284.647 kb on + strand, within PGA1_c02950 at 284.672 kb on + strand, within PGA1_c02950 at 284.677 kb on + strand, within PGA1_c02950 at 284.798 kb on - strand, within PGA1_c02950 at 284.810 kb on + strand, within PGA1_c02950 at 284.810 kb on + strand, within PGA1_c02950 at 284.865 kb on + strand, within PGA1_c02950 at 284.873 kb on - strand, within PGA1_c02950 at 284.880 kb on + strand, within PGA1_c02950 at 284.908 kb on + strand, within PGA1_c02950 at 284.913 kb on - strand, within PGA1_c02950 at 284.962 kb on + strand, within PGA1_c02950 at 284.965 kb on - strand, within PGA1_c02950 at 285.000 kb on - strand, within PGA1_c02950 at 285.008 kb on - strand, within PGA1_c02950 at 285.056 kb on - strand, within PGA1_c02950 at 285.056 kb on - strand, within PGA1_c02950 at 285.124 kb on - strand, within PGA1_c02950 at 285.130 kb on - strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.171 kb on + strand at 285.331 kb on - strand, within PGA1_c02960 at 285.341 kb on - strand, within PGA1_c02960 at 285.392 kb on + strand, within PGA1_c02960 at 285.433 kb on + strand, within PGA1_c02960 at 285.503 kb on - strand, within PGA1_c02960 at 285.541 kb on + strand, within PGA1_c02960 at 285.554 kb on - strand, within PGA1_c02960 at 285.561 kb on + strand, within PGA1_c02960 at 285.647 kb on - strand, within PGA1_c02960 at 285.696 kb on + strand, within PGA1_c02960 at 285.810 kb on - strand, within PGA1_c02960 at 285.895 kb on + strand, within PGA1_c02960 at 285.903 kb on - strand, within PGA1_c02960 at 285.947 kb on + strand, within PGA1_c02960 at 285.950 kb on - strand, within PGA1_c02960 at 285.955 kb on + strand, within PGA1_c02960 at 285.955 kb on + strand, within PGA1_c02960 at 285.955 kb on + strand, within PGA1_c02960 at 285.963 kb on - strand, within PGA1_c02960 at 285.978 kb on + strand, within PGA1_c02960 at 285.986 kb on - strand, within PGA1_c02960 at 285.992 kb on + strand, within PGA1_c02960 at 286.013 kb on + strand, within PGA1_c02960 at 286.104 kb on + strand at 286.108 kb on + strand at 286.108 kb on + strand at 286.110 kb on - strand at 286.111 kb on - strand at 286.153 kb on + strand at 286.161 kb on - strand at 286.161 kb on - strand at 286.186 kb on + strand, within PGA1_c02970
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 284,528 + -0.3 284,538 + +2.0 284,550 + +0.7 284,558 - +1.5 284,601 + PGA1_c02950 0.15 -1.3 284,621 + PGA1_c02950 0.18 +0.7 284,633 + PGA1_c02950 0.19 -0.9 284,639 - PGA1_c02950 0.20 +0.4 284,647 + PGA1_c02950 0.21 +1.4 284,672 + PGA1_c02950 0.25 +0.0 284,677 + PGA1_c02950 0.25 +1.0 284,798 - PGA1_c02950 0.42 -0.8 284,810 + PGA1_c02950 0.43 +1.1 284,810 + PGA1_c02950 0.43 -1.2 284,865 + PGA1_c02950 0.51 +0.2 284,873 - PGA1_c02950 0.52 +1.4 284,880 + PGA1_c02950 0.53 +0.7 284,908 + PGA1_c02950 0.57 -0.6 284,913 - PGA1_c02950 0.58 +0.7 284,962 + PGA1_c02950 0.64 -0.8 284,965 - PGA1_c02950 0.65 +1.0 285,000 - PGA1_c02950 0.70 +0.2 285,008 - PGA1_c02950 0.71 +1.2 285,056 - PGA1_c02950 0.77 +1.3 285,056 - PGA1_c02950 0.77 +0.7 285,124 - PGA1_c02950 0.87 +1.1 285,130 - PGA1_c02950 0.87 -2.6 285,136 + PGA1_c02950 0.88 +0.9 285,136 + PGA1_c02950 0.88 +1.0 285,136 + PGA1_c02950 0.88 +1.1 285,144 - PGA1_c02950 0.89 -1.6 285,144 - PGA1_c02950 0.89 -0.2 285,144 - PGA1_c02950 0.89 -0.4 285,171 + +0.4 285,331 - PGA1_c02960 0.12 +1.3 285,341 - PGA1_c02960 0.14 +1.3 285,392 + PGA1_c02960 0.19 -0.3 285,433 + PGA1_c02960 0.24 -0.7 285,503 - PGA1_c02960 0.31 +1.1 285,541 + PGA1_c02960 0.36 -1.5 285,554 - PGA1_c02960 0.37 +2.2 285,561 + PGA1_c02960 0.38 -0.9 285,647 - PGA1_c02960 0.47 -0.6 285,696 + PGA1_c02960 0.53 +1.4 285,810 - PGA1_c02960 0.65 -0.0 285,895 + PGA1_c02960 0.74 +1.0 285,903 - PGA1_c02960 0.75 -0.0 285,947 + PGA1_c02960 0.80 +0.8 285,950 - PGA1_c02960 0.81 -1.2 285,955 + PGA1_c02960 0.81 -0.3 285,955 + PGA1_c02960 0.81 -0.0 285,955 + PGA1_c02960 0.81 +1.0 285,963 - PGA1_c02960 0.82 +0.1 285,978 + PGA1_c02960 0.84 +0.6 285,986 - PGA1_c02960 0.84 -2.0 285,992 + PGA1_c02960 0.85 +0.5 286,013 + PGA1_c02960 0.87 -0.2 286,104 + +1.2 286,108 + -0.5 286,108 + +0.6 286,110 - -0.0 286,111 - -0.3 286,153 + +1.3 286,161 - +0.3 286,161 - -0.0 286,186 + PGA1_c02970 0.12 +0.1
Or see this region's nucleotide sequence