Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28480

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.001 mg/ml
2,977,261	-		PGA1_c28460	0.78	+1.7
2,977,298	+		PGA1_c28460	0.81	+0.6
2,977,298	+		PGA1_c28460	0.81	+0.2
2,977,306	-		PGA1_c28460	0.82	+0.8
2,977,306	-		PGA1_c28460	0.82	+0.9
2,977,306	-		PGA1_c28460	0.82	+2.1
2,977,306	-		PGA1_c28460	0.82	+0.5
2,977,310	+		PGA1_c28460	0.82	+0.2
2,977,318	-		PGA1_c28460	0.83	-0.4
2,977,318	-		PGA1_c28460	0.83	-0.5
2,977,352	+		PGA1_c28460	0.86	+1.1
2,977,369	+		PGA1_c28460	0.88	+1.8
2,977,377	+		PGA1_c28460	0.88	-0.2
2,977,385	-		PGA1_c28460	0.89	+1.7
2,977,484	+				+1.0
2,977,487	+				-0.2
2,977,489	+				+0.2
2,977,492	-				-2.8
2,977,553	+				-0.6
2,977,590	-				+1.8
2,977,590	-				-0.2
2,977,601	+				+0.4
2,977,619	-				+1.1
2,977,619	-				+0.2
2,977,697	+		PGA1_c28470	0.22	+0.9
2,977,705	-		PGA1_c28470	0.24	-1.0
2,977,705	-		PGA1_c28470	0.24	+0.2
2,977,732	-		PGA1_c28470	0.30	+0.9
2,977,741	+		PGA1_c28470	0.33	+1.1
2,977,749	-		PGA1_c28470	0.35	-0.7
2,977,749	-		PGA1_c28470	0.35	-0.8
2,977,792	-		PGA1_c28470	0.45	-1.2
2,977,819	+		PGA1_c28470	0.52	+2.2
2,977,827	-		PGA1_c28470	0.54	+0.1
2,977,827	-		PGA1_c28470	0.54	+0.4
2,977,827	-		PGA1_c28470	0.54	+1.4
2,977,862	-		PGA1_c28470	0.62	-0.3
2,977,864	+		PGA1_c28470	0.63	+1.3
2,977,864	+		PGA1_c28470	0.63	+0.8
2,977,867	-		PGA1_c28470	0.63	-0.5
2,977,881	+		PGA1_c28470	0.67	+0.4
2,977,888	+		PGA1_c28470	0.69	-0.8
2,977,888	+		PGA1_c28470	0.69	-0.2
2,977,889	-		PGA1_c28470	0.69	-1.0
2,977,906	-		PGA1_c28470	0.73	-0.8
2,977,906	-		PGA1_c28470	0.73	-0.2
2,977,949	+		PGA1_c28470	0.84	+1.1
2,977,949	+		PGA1_c28470	0.84	+2.8
2,977,949	+		PGA1_c28470	0.84	+1.1
2,977,949	+		PGA1_c28470	0.84	-0.3
2,977,949	+		PGA1_c28470	0.84	+1.1
2,977,949	+		PGA1_c28470	0.84	+0.2
2,977,949	+		PGA1_c28470	0.84	-0.8
2,977,949	+		PGA1_c28470	0.84	+0.4
2,977,949	+		PGA1_c28470	0.84	-1.2
2,977,949	+		PGA1_c28470	0.84	-1.8
2,977,949	+		PGA1_c28470	0.84	+0.8
2,977,957	-		PGA1_c28470	0.86	-0.5
2,977,957	-		PGA1_c28470	0.86	-3.4
2,977,957	-		PGA1_c28470	0.86	+1.3
2,977,957	-		PGA1_c28470	0.86	+1.6
2,977,957	-		PGA1_c28470	0.86	-0.8
2,977,957	-		PGA1_c28470	0.86	-1.5
2,977,957	-		PGA1_c28470	0.86	+0.6
2,977,957	-		PGA1_c28470	0.86	-0.8
2,977,957	-		PGA1_c28470	0.86	+1.1
2,977,957	-		PGA1_c28470	0.86	-1.2
2,977,957	-		PGA1_c28470	0.86	+2.0
2,977,957	-		PGA1_c28470	0.86	+0.5
2,977,957	-		PGA1_c28470	0.86	+0.8
2,978,018	-				-0.5
2,978,034	+				+1.1
2,978,037	+				+1.0
2,978,062	+				-0.8
2,978,090	+				-0.3
2,978,097	-				-1.3
2,978,097	-				-0.8
2,978,136	+				+0.6
2,978,144	-				+0.4
2,978,237	-				+1.2
2,978,241	+				+0.5
2,978,241	+				-0.8
2,978,241	+				+2.7
2,978,241	+				+0.4
2,978,242	-				+2.2
2,978,249	-				+1.0
2,978,249	-				+1.2
2,978,249	-				+0.5
2,978,418	+				-0.8
2,978,418	+				+1.1
2,978,418	+				+1.4
2,978,426	-				+2.0
2,978,500	+				+1.4
2,978,547	-				+0.0
2,978,564	+		PGA1_c28480	0.10	+1.1
2,978,619	+		PGA1_c28480	0.12	+2.3
2,978,619	+		PGA1_c28480	0.12	-0.2
2,978,619	+		PGA1_c28480	0.12	+1.6
2,978,627	-		PGA1_c28480	0.12	+0.4
2,978,627	-		PGA1_c28480	0.12	+0.2
2,978,627	-		PGA1_c28480	0.12	+1.2
2,978,627	-		PGA1_c28480	0.12	-0.0
2,978,627	-		PGA1_c28480	0.12	+0.8
2,978,627	-		PGA1_c28480	0.12	-2.4
2,978,627	-		PGA1_c28480	0.12	+0.8
2,978,627	-		PGA1_c28480	0.12	+1.0
2,978,627	-		PGA1_c28480	0.12	-1.0
2,978,627	-		PGA1_c28480	0.12	-1.2
2,978,627	-		PGA1_c28480	0.12	-0.2
2,978,635	+		PGA1_c28480	0.12	+0.8
2,978,635	-		PGA1_c28480	0.12	+0.4
2,978,650	+		PGA1_c28480	0.13	+0.2
2,978,658	-		PGA1_c28480	0.13	-0.8
2,978,691	-		PGA1_c28480	0.14	+0.6
2,978,691	-		PGA1_c28480	0.14	+0.9
2,978,691	-		PGA1_c28480	0.14	+1.1
2,978,691	-		PGA1_c28480	0.14	+0.3
2,978,797	-		PGA1_c28480	0.17	+0.4
2,978,822	+		PGA1_c28480	0.18	+0.8
2,978,835	-		PGA1_c28480	0.19	+1.1
2,978,915	-		PGA1_c28480	0.21	-0.8
2,979,028	+		PGA1_c28480	0.25	-1.2
2,979,029	+		PGA1_c28480	0.25	+0.7
2,979,036	-		PGA1_c28480	0.25	-1.5
2,979,082	-		PGA1_c28480	0.27	-0.2
2,979,114	-		PGA1_c28480	0.28	+0.9
2,979,165	-		PGA1_c28480	0.29	+2.2
2,979,167	-		PGA1_c28480	0.29	-2.6
2,979,172	+		PGA1_c28480	0.29	-0.3
2,979,207	+		PGA1_c28480	0.31	+1.0
2,979,207	+		PGA1_c28480	0.31	-1.5
2,979,207	+		PGA1_c28480	0.31	+0.1
2,979,212	+		PGA1_c28480	0.31	+1.3
2,979,215	-		PGA1_c28480	0.31	-0.7
2,979,215	-		PGA1_c28480	0.31	+0.0
2,979,230	+		PGA1_c28480	0.31	-0.2
2,979,330	-		PGA1_c28480	0.34	+0.3
2,979,337	+		PGA1_c28480	0.35	+0.1
2,979,345	-		PGA1_c28480	0.35	-2.2
2,979,374	-		PGA1_c28480	0.36	+3.1
2,979,392	-		PGA1_c28480	0.36	+1.1
2,979,392	-		PGA1_c28480	0.36	+0.3
2,979,412	+		PGA1_c28480	0.37	-0.2
2,979,417	+		PGA1_c28480	0.37	+0.6
2,979,436	-		PGA1_c28480	0.38	+0.8
2,979,447	+		PGA1_c28480	0.38	+0.8
2,979,452	+		PGA1_c28480	0.38	-0.2
2,979,452	+		PGA1_c28480	0.38	-0.9
2,979,504	-		PGA1_c28480	0.40	+0.8
2,979,543	+		PGA1_c28480	0.41	-1.2
2,979,551	-		PGA1_c28480	0.41	-0.0
2,979,584	+		PGA1_c28480	0.43	-0.6
2,979,602	+		PGA1_c28480	0.43	+1.4
2,979,675	+		PGA1_c28480	0.45	+0.2
2,979,681	-		PGA1_c28480	0.46	-1.5
2,979,681	-		PGA1_c28480	0.46	+0.4
2,979,691	-		PGA1_c28480	0.46	-1.4
2,979,755	-		PGA1_c28480	0.48	+1.2
2,979,803	-		PGA1_c28480	0.50	+1.1
2,979,808	-		PGA1_c28480	0.50	-1.2
2,979,822	+		PGA1_c28480	0.50	-0.9
2,979,861	+		PGA1_c28480	0.51	+0.8
2,979,880	+		PGA1_c28480	0.52	+0.3
2,979,894	+		PGA1_c28480	0.52	+1.1
2,979,902	-		PGA1_c28480	0.53	+2.0
2,979,925	+		PGA1_c28480	0.53	+0.6
2,979,967	+		PGA1_c28480	0.55	+1.0
2,979,975	-		PGA1_c28480	0.55	+0.6
2,980,080	-		PGA1_c28480	0.58	+1.8
2,980,121	+		PGA1_c28480	0.60	-0.8
2,980,121	+		PGA1_c28480	0.60	-1.2
2,980,155	+		PGA1_c28480	0.61	-1.8
2,980,155	+		PGA1_c28480	0.61	+0.1
2,980,155	+		PGA1_c28480	0.61	-1.5
2,980,163	-		PGA1_c28480	0.61	-1.0
2,980,163	-		PGA1_c28480	0.61	+0.2
2,980,164	-		PGA1_c28480	0.61	+0.5
2,980,261	-		PGA1_c28480	0.64	+0.4
2,980,274	-		PGA1_c28480	0.65	-0.4
2,980,324	-		PGA1_c28480	0.66	+1.2
2,980,473	-		PGA1_c28480	0.71	+3.5
2,980,550	+		PGA1_c28480	0.73	+0.2
2,980,571	+		PGA1_c28480	0.74	-1.8
2,980,571	+		PGA1_c28480	0.74	+1.0
2,980,571	+		PGA1_c28480	0.74	+0.8
2,980,571	+		PGA1_c28480	0.74	+0.7
2,980,571	+		PGA1_c28480	0.74	+1.8
2,980,571	+		PGA1_c28480	0.74	-0.2
2,980,571	+		PGA1_c28480	0.74	-1.6
2,980,579	-		PGA1_c28480	0.74	-1.2
2,980,579	-		PGA1_c28480	0.74	+0.8
2,980,579	-		PGA1_c28480	0.74	-0.1
2,980,589	-		PGA1_c28480	0.75	-1.2
2,980,716	+		PGA1_c28480	0.79	+0.8
2,980,716	+		PGA1_c28480	0.79	+0.2
2,980,724	-		PGA1_c28480	0.79	-0.2
2,980,724	-		PGA1_c28480	0.79	-0.6
2,980,724	-		PGA1_c28480	0.79	+0.0
2,980,753	+		PGA1_c28480	0.80	+0.2
2,980,753	+		PGA1_c28480	0.80	-0.0
2,980,761	-		PGA1_c28480	0.80	+0.6
2,980,785	+		PGA1_c28480	0.81	+1.5
2,980,785	+		PGA1_c28480	0.81	+0.8
2,980,785	+		PGA1_c28480	0.81	+0.7
2,980,793	-		PGA1_c28480	0.81	-1.1
2,980,798	-		PGA1_c28480	0.81	+1.6
2,980,808	-		PGA1_c28480	0.82	+0.2
2,980,813	+		PGA1_c28480	0.82	+2.6
2,980,813	+		PGA1_c28480	0.82	-0.4
2,980,813	-		PGA1_c28480	0.82	+1.5
2,980,818	-		PGA1_c28480	0.82	-0.8
2,980,853	-		PGA1_c28480	0.83	-0.8
2,980,857	+		PGA1_c28480	0.83	+0.5
2,980,857	+		PGA1_c28480	0.83	+0.1
2,980,858	+		PGA1_c28480	0.83	+0.8
2,980,858	+		PGA1_c28480	0.83	+0.1
2,980,865	-		PGA1_c28480	0.83	-0.8
2,980,866	-		PGA1_c28480	0.83	+0.4
2,980,866	-		PGA1_c28480	0.83	+1.3
2,980,866	-		PGA1_c28480	0.83	+1.4
2,980,866	-		PGA1_c28480	0.83	-0.8
2,980,866	-		PGA1_c28480	0.83	-0.8
2,980,866	-		PGA1_c28480	0.83	+1.3
2,980,866	-		PGA1_c28480	0.83	+2.2
2,980,875	+		PGA1_c28480	0.84	+0.8
2,980,875	+		PGA1_c28480	0.84	-0.5
2,980,875	+		PGA1_c28480	0.84	+0.2
2,980,882	-		PGA1_c28480	0.84	+2.4
2,980,883	-		PGA1_c28480	0.84	-0.4
2,980,918	+		PGA1_c28480	0.85	-1.2
2,980,926	-		PGA1_c28480	0.85	+0.9
2,980,926	-		PGA1_c28480	0.85	+1.1
2,980,966	+		PGA1_c28480	0.87	+1.6
2,980,974	-		PGA1_c28480	0.87	+0.8
2,980,974	-		PGA1_c28480	0.87	+1.7
2,980,974	-		PGA1_c28480	0.87	+0.2
2,980,974	-		PGA1_c28480	0.87	+1.6
2,980,990	-		PGA1_c28480	0.87	-0.8
2,981,108	+				-2.0
2,981,109	-				-0.2
2,981,119	+				-0.8
2,981,127	-				-0.9
2,981,160	-				+0.1
2,981,209	+				-0.8
2,981,209	+				-1.2
2,981,217	-				-0.2
2,981,297	+				-1.2
2,981,386	+				+0.8
2,981,418	+				+0.8
2,981,564	-				-0.3
2,981,564	-				-0.2
2,981,667	+				-0.4
2,981,691	+				-0.5
2,981,694	-				+0.1
2,981,694	-				+0.4
2,981,700	-				-0.3
2,981,749	+				+2.1
2,981,787	-				-0.8
2,981,813	+				+1.4
2,981,835	+				-0.2
2,981,835	+				+0.1
2,981,835	+				+0.8
2,981,835	+				+1.8
2,981,850	+				+0.0
2,981,855	+				+2.4
2,981,856	-				-1.8
2,981,894	-				-1.5
2,982,045	+				+0.8
2,982,063	+				+2.4
2,982,128	-				+0.3
2,982,221	-		PGA1_c28490	0.11	-0.2
2,982,239	-		PGA1_c28490	0.12	-1.5
2,982,266	-		PGA1_c28490	0.12	+0.6
2,982,282	+		PGA1_c28490	0.13	+2.4