Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02800

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02790 and PGA1_c02800 are separated by 80 nucleotidesPGA1_c02800 and PGA1_c02810 are separated by 43 nucleotides PGA1_c02790: PGA1_c02790 - putative carboxy-terminal-processing protease, at 268,343 to 269,686 _c02790 PGA1_c02800: PGA1_c02800 - putative transcriptional regulator, AraC family, at 269,767 to 270,639 _c02800 PGA1_c02810: PGA1_c02810 - P-hydroxybenzoate hydroxylase PobA, at 270,683 to 271,909 _c02810 Position (kb) 269 270 271Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 268.769 kb on + strand, within PGA1_c02790at 268.769 kb on + strand, within PGA1_c02790at 268.781 kb on + strand, within PGA1_c02790at 268.786 kb on + strand, within PGA1_c02790at 268.789 kb on - strand, within PGA1_c02790at 268.789 kb on - strand, within PGA1_c02790at 268.820 kb on + strand, within PGA1_c02790at 268.820 kb on + strand, within PGA1_c02790at 268.831 kb on + strand, within PGA1_c02790at 268.989 kb on - strand, within PGA1_c02790at 269.021 kb on + strand, within PGA1_c02790at 269.034 kb on - strand, within PGA1_c02790at 269.078 kb on - strand, within PGA1_c02790at 269.148 kb on + strand, within PGA1_c02790at 269.156 kb on - strand, within PGA1_c02790at 269.158 kb on + strand, within PGA1_c02790at 269.218 kb on + strand, within PGA1_c02790at 269.226 kb on - strand, within PGA1_c02790at 269.377 kb on + strand, within PGA1_c02790at 269.385 kb on - strand, within PGA1_c02790at 269.387 kb on + strand, within PGA1_c02790at 269.387 kb on - strand, within PGA1_c02790at 269.395 kb on - strand, within PGA1_c02790at 269.495 kb on + strand, within PGA1_c02790at 269.536 kb on - strand, within PGA1_c02790at 269.546 kb on - strand, within PGA1_c02790at 269.632 kb on + strandat 269.692 kb on + strandat 269.693 kb on + strandat 269.698 kb on + strandat 269.698 kb on + strandat 269.701 kb on - strandat 269.753 kb on + strandat 269.770 kb on - strandat 269.851 kb on + strandat 270.009 kb on - strand, within PGA1_c02800at 270.107 kb on - strand, within PGA1_c02800at 270.115 kb on - strand, within PGA1_c02800at 270.140 kb on + strand, within PGA1_c02800at 270.140 kb on + strand, within PGA1_c02800at 270.140 kb on + strand, within PGA1_c02800at 270.148 kb on - strand, within PGA1_c02800at 270.148 kb on - strand, within PGA1_c02800at 270.148 kb on - strand, within PGA1_c02800at 270.158 kb on - strand, within PGA1_c02800at 270.189 kb on + strand, within PGA1_c02800at 270.189 kb on + strand, within PGA1_c02800at 270.197 kb on - strand, within PGA1_c02800at 270.197 kb on - strand, within PGA1_c02800at 270.260 kb on + strand, within PGA1_c02800at 270.294 kb on - strand, within PGA1_c02800at 270.294 kb on - strand, within PGA1_c02800at 270.370 kb on - strand, within PGA1_c02800at 270.463 kb on - strand, within PGA1_c02800at 270.532 kb on + strand, within PGA1_c02800at 270.606 kb on + strandat 270.606 kb on + strandat 270.617 kb on + strandat 270.632 kb on - strandat 270.725 kb on - strandat 270.733 kb on + strandat 270.741 kb on - strandat 270.741 kb on - strandat 270.771 kb on - strandat 270.785 kb on - strandat 270.839 kb on + strand, within PGA1_c02810at 270.883 kb on - strand, within PGA1_c02810at 270.989 kb on - strand, within PGA1_c02810at 270.993 kb on - strand, within PGA1_c02810at 271.016 kb on - strand, within PGA1_c02810at 271.016 kb on - strand, within PGA1_c02810at 271.023 kb on + strand, within PGA1_c02810at 271.122 kb on + strand, within PGA1_c02810at 271.144 kb on + strand, within PGA1_c02810at 271.144 kb on + strand, within PGA1_c02810at 271.151 kb on - strand, within PGA1_c02810at 271.152 kb on - strand, within PGA1_c02810at 271.168 kb on + strand, within PGA1_c02810at 271.223 kb on - strand, within PGA1_c02810at 271.273 kb on + strand, within PGA1_c02810at 271.281 kb on - strand, within PGA1_c02810at 271.282 kb on - strand, within PGA1_c02810at 271.290 kb on + strand, within PGA1_c02810at 271.303 kb on + strand, within PGA1_c02810at 271.309 kb on + strand, within PGA1_c02810at 271.385 kb on + strand, within PGA1_c02810at 271.390 kb on - strand, within PGA1_c02810at 271.452 kb on + strand, within PGA1_c02810at 271.489 kb on + strand, within PGA1_c02810at 271.496 kb on + strand, within PGA1_c02810at 271.504 kb on - strand, within PGA1_c02810at 271.504 kb on - strand, within PGA1_c02810at 271.618 kb on - strand, within PGA1_c02810

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml
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268,769 + PGA1_c02790 0.32 +2.0
268,769 + PGA1_c02790 0.32 -1.8
268,781 + PGA1_c02790 0.33 +1.0
268,786 + PGA1_c02790 0.33 -2.8
268,789 - PGA1_c02790 0.33 -2.2
268,789 - PGA1_c02790 0.33 -4.0
268,820 + PGA1_c02790 0.35 -1.7
268,820 + PGA1_c02790 0.35 +0.5
268,831 + PGA1_c02790 0.36 -1.4
268,989 - PGA1_c02790 0.48 -0.0
269,021 + PGA1_c02790 0.50 +0.4
269,034 - PGA1_c02790 0.51 -0.8
269,078 - PGA1_c02790 0.55 -1.4
269,148 + PGA1_c02790 0.60 -1.1
269,156 - PGA1_c02790 0.60 -0.0
269,158 + PGA1_c02790 0.61 +0.5
269,218 + PGA1_c02790 0.65 -0.5
269,226 - PGA1_c02790 0.66 +0.3
269,377 + PGA1_c02790 0.77 +0.2
269,385 - PGA1_c02790 0.78 +1.8
269,387 + PGA1_c02790 0.78 -1.2
269,387 - PGA1_c02790 0.78 -2.3
269,395 - PGA1_c02790 0.78 -0.9
269,495 + PGA1_c02790 0.86 -0.0
269,536 - PGA1_c02790 0.89 +0.6
269,546 - PGA1_c02790 0.90 +0.4
269,632 + +1.0
269,692 + +1.4
269,693 + +0.7
269,698 + +1.0
269,698 + +2.1
269,701 - +0.5
269,753 + -3.0
269,770 - -1.6
269,851 + -0.9
270,009 - PGA1_c02800 0.28 +0.6
270,107 - PGA1_c02800 0.39 +1.0
270,115 - PGA1_c02800 0.40 +0.6
270,140 + PGA1_c02800 0.43 +1.0
270,140 + PGA1_c02800 0.43 -0.0
270,140 + PGA1_c02800 0.43 +1.1
270,148 - PGA1_c02800 0.44 +1.7
270,148 - PGA1_c02800 0.44 +1.2
270,148 - PGA1_c02800 0.44 -0.7
270,158 - PGA1_c02800 0.45 +0.2
270,189 + PGA1_c02800 0.48 -0.3
270,189 + PGA1_c02800 0.48 -0.1
270,197 - PGA1_c02800 0.49 +0.5
270,197 - PGA1_c02800 0.49 +0.1
270,260 + PGA1_c02800 0.56 +2.0
270,294 - PGA1_c02800 0.60 +0.4
270,294 - PGA1_c02800 0.60 +0.6
270,370 - PGA1_c02800 0.69 -0.6
270,463 - PGA1_c02800 0.80 +1.0
270,532 + PGA1_c02800 0.88 -2.2
270,606 + +0.7
270,606 + +0.1
270,617 + +1.1
270,632 - -0.3
270,725 - -0.3
270,733 + -2.6
270,741 - +1.0
270,741 - +0.6
270,771 - -1.1
270,785 - -0.7
270,839 + PGA1_c02810 0.13 -0.2
270,883 - PGA1_c02810 0.16 +1.2
270,989 - PGA1_c02810 0.25 -0.8
270,993 - PGA1_c02810 0.25 -0.5
271,016 - PGA1_c02810 0.27 +0.1
271,016 - PGA1_c02810 0.27 +0.3
271,023 + PGA1_c02810 0.28 +0.5
271,122 + PGA1_c02810 0.36 +0.1
271,144 + PGA1_c02810 0.38 +0.0
271,144 + PGA1_c02810 0.38 +0.2
271,151 - PGA1_c02810 0.38 -0.3
271,152 - PGA1_c02810 0.38 +0.2
271,168 + PGA1_c02810 0.40 +0.3
271,223 - PGA1_c02810 0.44 +0.3
271,273 + PGA1_c02810 0.48 +0.6
271,281 - PGA1_c02810 0.49 -0.0
271,282 - PGA1_c02810 0.49 -0.4
271,290 + PGA1_c02810 0.49 -2.5
271,303 + PGA1_c02810 0.51 +0.1
271,309 + PGA1_c02810 0.51 +0.5
271,385 + PGA1_c02810 0.57 +0.6
271,390 - PGA1_c02810 0.58 -1.6
271,452 + PGA1_c02810 0.63 -0.6
271,489 + PGA1_c02810 0.66 -0.6
271,496 + PGA1_c02810 0.66 +0.1
271,504 - PGA1_c02810 0.67 -0.0
271,504 - PGA1_c02810 0.67 -1.6
271,618 - PGA1_c02810 0.76 -0.5

Or see this region's nucleotide sequence