Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24960

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.001 mg/ml
2,599,845	+				-1.1
2,599,859	+				+1.2
2,599,859	+				-0.9
2,599,864	+				-1.9
2,599,867	-				-3.7
2,599,867	-				-0.2
2,599,867	-				+0.5
2,599,867	-				+0.3
2,599,869	+				+1.5
2,599,869	+				-0.1
2,599,869	+				-1.5
2,599,872	-				+1.1
2,599,877	-				+0.6
2,599,880	-				-1.3
2,599,968	+				+0.2
2,599,969	+				-1.2
2,599,977	-				+0.5
2,600,002	+				+0.7
2,600,002	+				-0.2
2,600,002	+				-1.9
2,600,002	+				-0.1
2,600,002	+				+0.6
2,600,010	-				+1.0
2,600,010	-				-0.2
2,600,010	-				-3.5
2,600,010	-				-0.4
2,600,010	-				+0.1
2,600,022	+				+0.0
2,600,045	-				-0.3
2,600,045	-				-1.9
2,600,045	-				-0.8
2,600,049	+				+0.5
2,600,088	-				-0.2
2,600,088	-				+0.1
2,600,099	-				+0.9
2,600,103	-				+0.1
2,600,103	-				-2.3
2,600,136	+				+1.2
2,600,138	+				+0.0
2,600,144	-				+0.0
2,600,146	-				-0.0
2,600,146	-				-0.1
2,600,151	+				-0.9
2,600,226	-				-1.6
2,600,270	+				+0.7
2,600,270	+				+0.0
2,600,307	-				-3.3
2,600,327	-				-1.2
2,600,400	+		PGA1_c24960	0.10	-0.7
2,600,413	-		PGA1_c24960	0.11	-1.3
2,600,416	+		PGA1_c24960	0.11	+0.3
2,600,417	+		PGA1_c24960	0.11	-1.1
2,600,432	+		PGA1_c24960	0.12	+0.5
2,600,471	-		PGA1_c24960	0.14	-0.4
2,600,471	-		PGA1_c24960	0.14	-0.7
2,600,471	-		PGA1_c24960	0.14	+0.6
2,600,471	-		PGA1_c24960	0.14	-1.2
2,600,536	-		PGA1_c24960	0.17	+1.1
2,600,538	+		PGA1_c24960	0.17	+0.7
2,600,551	-		PGA1_c24960	0.18	-0.2
2,600,551	-		PGA1_c24960	0.18	+1.0
2,600,564	-		PGA1_c24960	0.19	-1.4
2,600,577	+		PGA1_c24960	0.19	+1.1
2,600,577	+		PGA1_c24960	0.19	-0.7
2,600,585	+		PGA1_c24960	0.20	-0.2
2,600,585	-		PGA1_c24960	0.20	-0.2
2,600,668	+		PGA1_c24960	0.24	+1.2
2,600,673	+		PGA1_c24960	0.24	-0.4
2,600,676	-		PGA1_c24960	0.24	-0.2
2,600,676	-		PGA1_c24960	0.24	-0.1
2,600,698	+		PGA1_c24960	0.26	-1.6
2,600,701	+		PGA1_c24960	0.26	+0.5
2,600,701	+		PGA1_c24960	0.26	-3.5
2,600,719	-		PGA1_c24960	0.27	-0.3
2,600,719	-		PGA1_c24960	0.27	-0.1
2,600,719	-		PGA1_c24960	0.27	-1.3
2,600,762	-		PGA1_c24960	0.29	+0.3
2,600,764	-		PGA1_c24960	0.29	+0.5
2,600,777	-		PGA1_c24960	0.30	-0.7
2,600,784	+		PGA1_c24960	0.30	-0.9
2,600,784	+		PGA1_c24960	0.30	-1.6
2,600,784	+		PGA1_c24960	0.30	+0.7
2,600,807	-		PGA1_c24960	0.31	+1.5
2,600,913	+		PGA1_c24960	0.37	+0.1
2,600,921	-		PGA1_c24960	0.37	-1.4
2,601,116	+		PGA1_c24960	0.47	-0.4
2,601,116	+		PGA1_c24960	0.47	-1.5
2,601,124	-		PGA1_c24960	0.47	-2.1
2,601,131	-		PGA1_c24960	0.48	+0.2
2,601,154	+		PGA1_c24960	0.49	-1.0
2,601,157	-		PGA1_c24960	0.49	+0.0
2,601,167	+		PGA1_c24960	0.50	-0.1
2,601,197	-		PGA1_c24960	0.51	-0.3
2,601,225	+		PGA1_c24960	0.52	+1.0
2,601,346	+		PGA1_c24960	0.59	-0.1
2,601,428	+		PGA1_c24960	0.63	-0.6
2,601,450	-		PGA1_c24960	0.64	+0.3
2,601,450	-		PGA1_c24960	0.64	+0.5
2,601,567	+		PGA1_c24960	0.70	-0.4
2,601,575	-		PGA1_c24960	0.70	-2.3
2,601,583	-		PGA1_c24960	0.71	-2.6
2,601,585	+		PGA1_c24960	0.71	-1.6
2,601,587	+		PGA1_c24960	0.71	-0.5
2,601,593	-		PGA1_c24960	0.71	-0.3
2,601,595	-		PGA1_c24960	0.71	-0.5
2,601,595	-		PGA1_c24960	0.71	+0.2
2,601,595	-		PGA1_c24960	0.71	+0.0
2,601,597	+		PGA1_c24960	0.71	-0.8
2,601,597	+		PGA1_c24960	0.71	-2.0
2,601,597	+		PGA1_c24960	0.71	+0.2
2,601,597	+		PGA1_c24960	0.71	-2.9
2,601,598	+		PGA1_c24960	0.72	-0.0
2,601,605	-		PGA1_c24960	0.72	-0.6
2,601,653	-		PGA1_c24960	0.74	+0.2
2,601,680	-		PGA1_c24960	0.76	-0.3
2,601,687	+		PGA1_c24960	0.76	-0.4
2,601,692	-		PGA1_c24960	0.76	-0.3
2,601,695	-		PGA1_c24960	0.76	+0.4
2,601,718	+		PGA1_c24960	0.78	-1.7
2,601,733	-		PGA1_c24960	0.78	+0.0
2,601,739	-		PGA1_c24960	0.79	+0.1
2,601,757	-		PGA1_c24960	0.80	+1.0
2,601,759	+		PGA1_c24960	0.80	-0.5
2,601,759	+		PGA1_c24960	0.80	-0.6
2,601,759	+		PGA1_c24960	0.80	+1.7
2,601,759	+		PGA1_c24960	0.80	-1.7
2,601,759	+		PGA1_c24960	0.80	-2.1
2,601,759	+		PGA1_c24960	0.80	-0.3
2,601,767	-		PGA1_c24960	0.80	-1.2
2,601,767	-		PGA1_c24960	0.80	-0.9
2,601,767	-		PGA1_c24960	0.80	-1.0
2,601,798	+		PGA1_c24960	0.82	-0.1
2,601,803	+		PGA1_c24960	0.82	+0.1
2,601,803	+		PGA1_c24960	0.82	+0.2
2,601,811	-		PGA1_c24960	0.82	+0.2
2,601,811	-		PGA1_c24960	0.82	-1.5
2,601,811	-		PGA1_c24960	0.82	-1.6
2,601,811	-		PGA1_c24960	0.82	+0.5
2,601,811	-		PGA1_c24960	0.82	+0.3
2,601,811	-		PGA1_c24960	0.82	-0.3
2,601,811	-		PGA1_c24960	0.82	+0.6
2,601,811	-		PGA1_c24960	0.82	-1.5
2,601,821	-		PGA1_c24960	0.83	-0.1
2,601,883	+		PGA1_c24960	0.86	-2.1
2,601,883	-		PGA1_c24960	0.86	+0.2
2,601,885	+		PGA1_c24960	0.86	-0.6
2,601,885	+		PGA1_c24960	0.86	-0.2
2,601,893	-		PGA1_c24960	0.87	-0.6
2,601,913	+		PGA1_c24960	0.88	+0.4
2,601,920	+		PGA1_c24960	0.88	+0.2
2,601,942	+		PGA1_c24960	0.89	-0.3
2,601,942	+		PGA1_c24960	0.89	+0.6
2,601,942	+		PGA1_c24960	0.89	-0.0
2,601,942	+		PGA1_c24960	0.89	+0.6
2,601,942	+		PGA1_c24960	0.89	+1.0
2,601,942	+		PGA1_c24960	0.89	+2.0
2,601,947	+		PGA1_c24960	0.89	-0.3
2,601,947	+		PGA1_c24960	0.89	-0.5
2,601,947	+		PGA1_c24960	0.89	-1.3
2,601,947	+		PGA1_c24960	0.89	+0.1
2,601,947	+		PGA1_c24960	0.89	+0.4
2,601,947	+		PGA1_c24960	0.89	-0.6
2,601,947	+		PGA1_c24960	0.89	+1.0
2,601,947	+		PGA1_c24960	0.89	+0.4
2,601,947	+		PGA1_c24960	0.89	+0.4
2,601,947	+		PGA1_c24960	0.89	+0.2
2,601,947	+		PGA1_c24960	0.89	-1.5
2,601,947	+		PGA1_c24960	0.89	+0.8
2,601,947	+		PGA1_c24960	0.89	+0.6
2,601,947	+		PGA1_c24960	0.89	+0.1
2,601,947	+		PGA1_c24960	0.89	-0.5
2,601,947	+		PGA1_c24960	0.89	-0.1
2,601,947	+		PGA1_c24960	0.89	-0.2
2,601,947	+		PGA1_c24960	0.89	+0.2
2,601,947	+		PGA1_c24960	0.89	+0.8
2,601,947	+		PGA1_c24960	0.89	+0.0
2,601,947	+		PGA1_c24960	0.89	+0.3
2,601,947	+		PGA1_c24960	0.89	-0.9
2,601,947	+		PGA1_c24960	0.89	-0.2
2,601,947	+		PGA1_c24960	0.89	+0.0
2,601,947	+		PGA1_c24960	0.89	+0.3
2,601,947	+		PGA1_c24960	0.89	-0.3
2,601,947	+		PGA1_c24960	0.89	-0.9
2,601,947	+		PGA1_c24960	0.89	-0.1
2,601,950	-		PGA1_c24960	0.89	-0.6
2,601,950	-		PGA1_c24960	0.89	-0.6
2,601,955	-		PGA1_c24960	0.90	-0.1
2,601,955	-		PGA1_c24960	0.90	+0.9
2,601,955	-		PGA1_c24960	0.90	+1.3
2,601,955	-		PGA1_c24960	0.90	-1.7
2,601,955	-		PGA1_c24960	0.90	-1.2
2,601,955	-		PGA1_c24960	0.90	-1.0
2,601,955	-		PGA1_c24960	0.90	+0.2
2,601,955	-		PGA1_c24960	0.90	+0.4
2,601,955	-		PGA1_c24960	0.90	+0.7
2,601,955	-		PGA1_c24960	0.90	-0.9
2,601,955	-		PGA1_c24960	0.90	-0.9
2,601,955	-		PGA1_c24960	0.90	+0.9
2,601,955	-		PGA1_c24960	0.90	-0.2
2,601,955	-		PGA1_c24960	0.90	-2.3
2,601,955	-		PGA1_c24960	0.90	+0.4
2,601,955	-		PGA1_c24960	0.90	+1.3
2,601,969	+				-0.2
2,601,972	-				-0.8
2,601,974	+				-0.3
2,601,977	-				-1.1
2,601,982	-				-1.1
2,601,997	-				-0.6
2,602,008	+				+0.2
2,602,013	-				+1.3
2,602,018	-				+0.7
2,602,020	+				+0.5
2,602,027	-				+0.6
2,602,028	-				+0.1
2,602,028	-				+1.4
2,602,032	-				+0.1
2,602,038	+				-0.7
2,602,038	+				-1.4
2,602,053	+				-0.6
2,602,053	+				-0.8
2,602,053	+				+1.1
2,602,053	+				-1.5
2,602,053	+				-2.5
2,602,053	+				+2.4
2,602,053	+				-0.5
2,602,053	+				-1.3
2,602,053	+				-0.3
2,602,053	+				-2.7
2,602,053	+				-0.4
2,602,053	+				+0.9
2,602,053	+				-0.2
2,602,059	-				+0.2
2,602,061	-				+0.1
2,602,061	-				-1.0
2,602,061	-				+1.0
2,602,061	-				+0.9
2,602,061	-				+0.3
2,602,061	-				+0.3
2,602,061	-				+0.6
2,602,061	-				+0.1
2,602,061	-				-0.9
2,602,061	-				-1.1
2,602,061	-				+0.0
2,602,061	-				-0.8
2,602,061	-				-1.6
2,602,061	-				-0.1
2,602,061	-				+0.1
2,602,084	+				-0.5
2,602,093	+				-0.7
2,602,094	+				-1.6
2,602,160	+				+0.5
2,602,161	-				+0.4
2,602,161	-				+0.1
2,602,161	-				-2.0
2,602,163	+				+0.2
2,602,163	-				-1.9
2,602,165	+				-0.6
2,602,165	+				-0.2
2,602,165	+				-0.9
2,602,165	+				-0.6
2,602,165	+				+1.3
2,602,165	+				-0.5
2,602,165	+				-0.7
2,602,165	+				-0.5
2,602,165	+				-0.9
2,602,165	+				-0.7
2,602,165	+				-1.0
2,602,166	-				-0.5
2,602,166	-				-1.3
2,602,168	-				-0.7
2,602,168	-				+0.2
2,602,168	-				-0.9
2,602,168	-				-0.5
2,602,171	-				-0.2
2,602,172	+				-1.4
2,602,173	-				-0.9
2,602,173	-				+0.3
2,602,173	-				-0.6
2,602,173	-				+0.7
2,602,173	-				-0.3
2,602,173	-				+0.1
2,602,173	-				-0.6
2,602,173	-				+1.9
2,602,173	-				-2.3
2,602,173	-				+0.7
2,602,173	-				+0.4
2,602,173	-				+0.2
2,602,173	-				-0.9
2,602,173	-				-1.9
2,602,173	-				+0.0
2,602,173	-				-1.7
2,602,173	-				+0.4
2,602,173	-				+0.1
2,602,173	-				-0.9
2,602,173	-				-0.4
2,602,173	-				-0.5
2,602,173	-				-0.1
2,602,196	+				+0.6
2,602,222	+				+1.3
2,602,222	+				+1.2
2,602,230	-				+1.1
2,602,230	-				+0.8
2,602,248	+				-0.6
2,602,256	-				+0.0
2,602,258	+				+1.1
2,602,258	+				-0.5
2,602,258	+				-0.7
2,602,258	+				+0.1
2,602,258	+				+0.3
2,602,258	+				+1.0
2,602,258	+				+1.2
2,602,258	+				+1.5
2,602,258	+				+0.1
2,602,258	+				+0.5
2,602,258	+				+0.6
2,602,258	+				+0.7
2,602,258	+				+1.9
2,602,258	+				-1.4
2,602,258	+				-0.4
2,602,258	+				+0.4
2,602,258	+				-1.7
2,602,258	+				-2.0
2,602,258	+				+1.4
2,602,259	-				+0.6
2,602,259	-				+0.1
2,602,266	-				+0.8
2,602,266	-				-2.0
2,602,266	-				+0.4
2,602,266	-				+0.5
2,602,266	-				-2.6
2,602,266	-				-1.3
2,602,266	-				-0.2
2,602,266	-				-0.2
2,602,266	-				-0.5
2,602,266	-				+0.7
2,602,266	-				-0.6
2,602,266	-				-1.0
2,602,266	-				+0.2
2,602,266	-				-1.4
2,602,266	-				-0.5
2,602,266	-				-1.0
2,602,286	+				-0.9
2,602,327	+				-0.7
2,602,333	-				+0.7
2,602,334	-				-0.3
2,602,335	-				-0.0
2,602,361	+				+1.2
2,602,388	+		PGA1_c24970	0.12	+0.3
2,602,401	-		PGA1_c24970	0.14	+0.3
2,602,402	-		PGA1_c24970	0.14	-0.5
2,602,413	+		PGA1_c24970	0.15	-1.5
2,602,421	-		PGA1_c24970	0.16	+1.0
2,602,521	+		PGA1_c24970	0.27	+0.2
2,602,566	+		PGA1_c24970	0.32	-0.4
2,602,691	+		PGA1_c24970	0.46	+0.1
2,602,693	-		PGA1_c24970	0.46	-0.9
2,602,726	+		PGA1_c24970	0.50	+0.9
2,602,783	-		PGA1_c24970	0.56	-0.5
2,602,790	+		PGA1_c24970	0.57	+1.3
2,602,798	-		PGA1_c24970	0.58	-0.1
2,602,798	-		PGA1_c24970	0.58	-0.5
2,602,808	+		PGA1_c24970	0.59	+1.0
2,602,808	-		PGA1_c24970	0.59	+0.2
2,602,890	-		PGA1_c24970	0.68	-0.3
2,602,953	+		PGA1_c24970	0.76	+0.2
2,602,966	-		PGA1_c24970	0.77	+0.1
2,602,966	-		PGA1_c24970	0.77	-1.3
2,602,990	+		PGA1_c24970	0.80	-0.6
2,603,010	-		PGA1_c24970	0.82	-2.0
2,603,010	-		PGA1_c24970	0.82	+0.8
2,603,020	-		PGA1_c24970	0.83	-0.9
2,603,031	+		PGA1_c24970	0.84	-0.7