Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19710

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.001 mg/ml
2,045,299	+		PGA1_c19700	0.49	-0.1
2,045,307	-		PGA1_c19700	0.50	-0.3
2,045,312	-		PGA1_c19700	0.50	+1.0
2,045,312	-		PGA1_c19700	0.50	+0.4
2,045,364	-		PGA1_c19700	0.53	-0.3
2,045,374	-		PGA1_c19700	0.54	-0.4
2,045,383	+		PGA1_c19700	0.54	-2.7
2,045,383	+		PGA1_c19700	0.54	-0.1
2,045,391	-		PGA1_c19700	0.55	-0.3
2,045,421	-		PGA1_c19700	0.56	-0.5
2,045,479	-		PGA1_c19700	0.60	+0.4
2,045,537	+		PGA1_c19700	0.63	+0.0
2,045,569	+		PGA1_c19700	0.65	+0.2
2,045,577	-		PGA1_c19700	0.65	-0.4
2,045,577	-		PGA1_c19700	0.65	-3.5
2,045,613	-		PGA1_c19700	0.67	-0.1
2,045,613	-		PGA1_c19700	0.67	-0.3
2,045,616	+		PGA1_c19700	0.67	-0.3
2,045,616	+		PGA1_c19700	0.67	+2.0
2,045,624	-		PGA1_c19700	0.68	-0.6
2,045,646	-		PGA1_c19700	0.69	-0.2
2,045,648	+		PGA1_c19700	0.69	+0.2
2,045,648	+		PGA1_c19700	0.69	-0.1
2,045,661	-		PGA1_c19700	0.70	+1.3
2,045,694	-		PGA1_c19700	0.72	-0.5
2,045,813	-		PGA1_c19700	0.79	-2.0
2,045,814	-		PGA1_c19700	0.79	-0.7
2,045,814	-		PGA1_c19700	0.79	-0.2
2,045,816	+		PGA1_c19700	0.79	+0.2
2,045,824	-		PGA1_c19700	0.79	-0.3
2,045,831	+		PGA1_c19700	0.80	+1.2
2,045,842	+		PGA1_c19700	0.80	+1.0
2,045,929	+		PGA1_c19700	0.85	+1.5
2,045,932	+		PGA1_c19700	0.85	-0.4
2,046,044	-				-1.3
2,046,057	-				+1.2
2,046,230	+				+1.4
2,046,235	+				+0.3
2,046,238	-				+1.0
2,046,238	-				-1.9
2,046,243	-				+0.1
2,046,277	+				+0.7
2,046,277	+				-0.2
2,046,277	+				-0.2
2,046,295	-				-0.7
2,046,312	-				-0.5
2,046,312	-				-1.3
2,046,405	+				+1.1
2,046,433	-		PGA1_c19710	0.11	-0.8
2,046,446	-		PGA1_c19710	0.12	+1.4
2,046,460	+		PGA1_c19710	0.13	-0.3
2,046,460	+		PGA1_c19710	0.13	-0.1
2,046,460	+		PGA1_c19710	0.13	-1.7
2,046,510	+		PGA1_c19710	0.17	+0.0
2,046,528	-		PGA1_c19710	0.18	-0.5
2,046,692	-		PGA1_c19710	0.31	-0.1
2,046,801	+		PGA1_c19710	0.39	+0.2
2,046,836	-		PGA1_c19710	0.41	-2.3
2,046,875	-		PGA1_c19710	0.44	+0.7
2,046,885	-		PGA1_c19710	0.45	-0.0
2,046,967	+		PGA1_c19710	0.51	-1.0
2,047,002	-		PGA1_c19710	0.53	+0.0
2,047,091	-		PGA1_c19710	0.60	-1.1
2,047,106	+		PGA1_c19710	0.61	-0.5
2,047,114	-		PGA1_c19710	0.62	+0.7
2,047,124	-		PGA1_c19710	0.63	-0.1
2,047,145	-		PGA1_c19710	0.64	+1.0
2,047,160	-		PGA1_c19710	0.65	-0.3
2,047,179	+		PGA1_c19710	0.67	+0.3
2,047,179	+		PGA1_c19710	0.67	-0.3
2,047,180	+		PGA1_c19710	0.67	-1.3
2,047,184	+		PGA1_c19710	0.67	+0.1
2,047,224	-		PGA1_c19710	0.70	+0.7
2,047,253	+		PGA1_c19710	0.72	+0.0
2,047,253	+		PGA1_c19710	0.72	+0.1
2,047,257	+		PGA1_c19710	0.72	-1.3
2,047,261	-		PGA1_c19710	0.73	+0.5
2,047,320	-		PGA1_c19710	0.77	+0.1
2,047,320	-		PGA1_c19710	0.77	-0.8
2,047,320	-		PGA1_c19710	0.77	+0.1
2,047,320	-		PGA1_c19710	0.77	+0.6
2,047,348	+		PGA1_c19710	0.79	+0.7
2,047,356	-		PGA1_c19710	0.80	-1.7
2,047,368	-		PGA1_c19710	0.81	-0.6
2,047,384	+		PGA1_c19710	0.82	-0.7
2,047,415	-		PGA1_c19710	0.84	-3.6
2,047,424	+		PGA1_c19710	0.85	-0.8
2,047,438	+		PGA1_c19710	0.86	+0.8
2,047,465	+		PGA1_c19710	0.88	+0.4
2,047,479	-		PGA1_c19710	0.89	-1.7
2,047,517	+				-1.8
2,047,564	+				+0.1
2,047,569	+				-1.1
2,047,569	+				+0.3
2,047,577	-				+0.4
2,047,579	+				+0.8
2,047,632	-				-2.6
2,047,638	-				-0.1
2,047,652	-				-1.8
2,047,652	-				-1.5
2,047,658	+				+0.5
2,047,658	+				-0.9
2,047,658	+				+0.6
2,047,658	+				+0.7
2,047,666	-				-0.2
2,047,666	-				-0.2
2,047,672	-				-0.4
2,047,676	-				-1.9
2,047,677	-				-1.2
2,047,719	+				+0.8
2,047,727	-				-1.3
2,047,727	-				+1.1
2,047,753	+				+1.1
2,047,759	+				+0.3
2,047,761	-				-0.5
2,047,769	+				-2.2
2,047,769	+				-2.2
2,047,769	+				+2.0
2,047,771	-				-1.3
2,047,777	-				+1.0
2,047,777	-				-1.3
2,047,777	-				+0.4
2,047,833	+				-0.6
2,047,900	-				+0.4
2,047,917	-		PGA1_c19720	0.15	-1.2
2,047,932	-		PGA1_c19720	0.19	-1.2
2,047,932	-		PGA1_c19720	0.19	+1.1
2,047,932	-		PGA1_c19720	0.19	+0.8
2,047,932	-		PGA1_c19720	0.19	-1.0
2,047,932	-		PGA1_c19720	0.19	-0.8
2,047,932	-		PGA1_c19720	0.19	-0.4
2,047,932	-		PGA1_c19720	0.19	-0.8
2,047,932	-		PGA1_c19720	0.19	+0.9
2,047,943	-		PGA1_c19720	0.22	+0.1
2,047,969	+		PGA1_c19720	0.30	+0.2
2,047,980	+		PGA1_c19720	0.34	-0.3
2,047,980	+		PGA1_c19720	0.34	+1.0
2,047,980	+		PGA1_c19720	0.34	+1.5
2,047,984	+		PGA1_c19720	0.35	+0.8
2,047,984	+		PGA1_c19720	0.35	-1.0
2,047,988	-		PGA1_c19720	0.36	+1.2
2,047,988	-		PGA1_c19720	0.36	+0.3
2,048,002	-		PGA1_c19720	0.40	+0.2
2,048,047	-		PGA1_c19720	0.54	-1.3
2,048,149	-		PGA1_c19720	0.85	+1.7
2,048,164	+		PGA1_c19720	0.89	+0.7
2,048,174	+				+1.2
2,048,182	-				-0.7
2,048,208	-				+1.2
2,048,211	+				-1.7
2,048,250	+				+0.6
2,048,252	+				+1.3
2,048,262	+				+1.1
2,048,265	+				-1.7
2,048,331	+		PGA1_c19730	0.37	+0.6
2,048,331	+				-0.9
2,048,336	+		PGA1_c19730	0.40	-0.9
2,048,363	+		PGA1_c19730	0.56	-0.3
2,048,385	-		PGA1_c19730	0.68	-2.2
2,048,403	+		PGA1_c19730	0.79	-2.2
2,048,403	+		PGA1_c19730	0.79	+1.4
2,048,440	+				-1.2
2,048,491	+		PGA1_c19740	0.11	+0.7
2,048,492	+		PGA1_c19740	0.12	+0.0