Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19300

Experiment: m.b. Doxycycline hyclate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.001 mg/ml
2,005,520	-		PGA1_c19280	0.89	-0.9
2,005,529	-		PGA1_c19280	0.89	+0.0
2,005,541	+				+0.2
2,005,554	+				-0.6
2,005,565	-				-0.9
2,005,565	-				-0.0
2,005,591	+				-1.8
2,005,626	+				-0.7
2,005,651	-				-1.5
2,005,651	-				+0.6
2,006,377	+				-0.9
2,006,377	+				-0.3
2,006,395	-				+3.0
2,006,397	+				+0.3
2,006,405	-				+0.7
2,006,473	+				-0.7
2,006,473	+				+1.0
2,006,473	+				+0.7
2,006,473	+				+0.7
2,006,653	-		PGA1_c19300	0.12	-0.9
2,006,672	+		PGA1_c19300	0.14	-0.9
2,006,680	-		PGA1_c19300	0.15	-1.7
2,006,680	-		PGA1_c19300	0.15	-0.9
2,006,691	-		PGA1_c19300	0.16	+0.6
2,006,693	+		PGA1_c19300	0.16	+0.9
2,006,699	-		PGA1_c19300	0.16	+0.3
2,006,753	+		PGA1_c19300	0.21	-1.1
2,006,780	+		PGA1_c19300	0.23	-0.6
2,006,796	+		PGA1_c19300	0.24	-0.5
2,006,832	+		PGA1_c19300	0.27	-0.3
2,006,846	-		PGA1_c19300	0.29	+0.3
2,006,896	+		PGA1_c19300	0.33	-1.0
2,006,901	+		PGA1_c19300	0.33	-0.5
2,006,911	+		PGA1_c19300	0.34	-0.4
2,006,919	-		PGA1_c19300	0.35	+0.2
2,006,988	+		PGA1_c19300	0.41	-0.5
2,007,125	+		PGA1_c19300	0.52	-1.3
2,007,125	+		PGA1_c19300	0.52	-1.5
2,007,133	-		PGA1_c19300	0.53	-0.3
2,007,146	+		PGA1_c19300	0.54	+0.1
2,007,157	-		PGA1_c19300	0.55	+0.7
2,007,191	-		PGA1_c19300	0.58	-0.1
2,007,258	-		PGA1_c19300	0.63	+1.1
2,007,279	+		PGA1_c19300	0.65	+2.5
2,007,313	+		PGA1_c19300	0.68	-0.3
2,007,313	+		PGA1_c19300	0.68	-0.1
2,007,313	+		PGA1_c19300	0.68	+1.5
2,007,313	+		PGA1_c19300	0.68	-1.3
2,007,313	+		PGA1_c19300	0.68	-0.9
2,007,313	+		PGA1_c19300	0.68	+0.4
2,007,321	-		PGA1_c19300	0.68	-0.9
2,007,321	-		PGA1_c19300	0.68	-0.9
2,007,374	+		PGA1_c19300	0.73	+0.7
2,007,382	-		PGA1_c19300	0.74	+0.3
2,007,418	+		PGA1_c19300	0.77	-1.0
2,007,431	+		PGA1_c19300	0.78	-0.1
2,007,520	+		PGA1_c19300	0.85	-1.2
2,007,544	+		PGA1_c19300	0.87	-1.4
2,007,612	-				+0.4
2,007,620	-				-1.1
2,007,687	-				+0.9
2,007,687	-				+0.8
2,007,730	-				-0.3
2,007,770	+				+1.2
2,007,779	-				-0.6
2,007,812	+				-0.2
2,007,883	-				-2.1
2,007,891	+				-0.7
2,007,969	-				+0.7
2,007,969	-				+0.3
2,007,969	-				+0.4
2,007,971	+				+0.3
2,008,107	-		PGA1_c19310	0.14	-0.9
2,008,199	+		PGA1_c19310	0.18	+1.4
2,008,221	+		PGA1_c19310	0.19	+3.2
2,008,247	-		PGA1_c19310	0.21	-0.2
2,008,322	-		PGA1_c19310	0.24	+1.1
2,008,322	-		PGA1_c19310	0.24	+0.9
2,008,331	+		PGA1_c19310	0.25	+0.2
2,008,351	-		PGA1_c19310	0.26	+0.4
2,008,353	+		PGA1_c19310	0.26	+0.3
2,008,353	+		PGA1_c19310	0.26	-0.1
2,008,353	+		PGA1_c19310	0.26	-0.1
2,008,353	+		PGA1_c19310	0.26	-1.9
2,008,361	-		PGA1_c19310	0.26	+1.0
2,008,361	-		PGA1_c19310	0.26	-1.2
2,008,361	-		PGA1_c19310	0.26	-0.2
2,008,361	-		PGA1_c19310	0.26	-1.7
2,008,376	+		PGA1_c19310	0.27	+0.3
2,008,381	-		PGA1_c19310	0.27	-1.0
2,008,393	+		PGA1_c19310	0.28	+1.5
2,008,393	+		PGA1_c19310	0.28	-0.7
2,008,398	+		PGA1_c19310	0.28	-0.2
2,008,401	-		PGA1_c19310	0.28	-0.9
2,008,406	-		PGA1_c19310	0.28	-0.7
2,008,466	-		PGA1_c19310	0.31	+0.1
2,008,466	-		PGA1_c19310	0.31	+0.5
2,008,551	+		PGA1_c19310	0.35	-0.4
2,008,551	+		PGA1_c19310	0.35	-2.1
2,008,551	+		PGA1_c19310	0.35	-1.3
2,008,559	-		PGA1_c19310	0.36	+0.7
2,008,588	+		PGA1_c19310	0.37	-0.7
2,008,618	-		PGA1_c19310	0.39	-0.5
2,008,639	+		PGA1_c19310	0.40	-2.1
2,008,639	+		PGA1_c19310	0.40	+0.6
2,008,642	-		PGA1_c19310	0.40	+0.7
2,008,644	+		PGA1_c19310	0.40	-0.4
2,008,656	+		PGA1_c19310	0.41	+0.3
2,008,659	-		PGA1_c19310	0.41	-1.3
2,008,659	-		PGA1_c19310	0.41	-0.5