Experiment: m.b. Doxycycline hyclate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c10160 and PGA1_c10170 are separated by 87 nucleotides PGA1_c10170 and PGA1_c10180 are separated by 98 nucleotides
PGA1_c10160: PGA1_c10160 - amidohydrolase, at 1,051,421 to 1,052,587
_c10160
PGA1_c10170: PGA1_c10170 - putative hippurate hydrolase, at 1,052,675 to 1,053,838
_c10170
PGA1_c10180: PGA1_c10180 - lipopolysaccharide core biosynthesis mannosyltransferase LpcC, at 1,053,937 to 1,054,980
_c10180
Position (kb)
1052
1053
1054 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1051.677 kb on - strand, within PGA1_c10160 at 1051.677 kb on - strand, within PGA1_c10160 at 1051.677 kb on - strand, within PGA1_c10160 at 1051.679 kb on - strand, within PGA1_c10160 at 1051.729 kb on - strand, within PGA1_c10160 at 1051.741 kb on + strand, within PGA1_c10160 at 1051.759 kb on + strand, within PGA1_c10160 at 1051.776 kb on + strand, within PGA1_c10160 at 1051.895 kb on + strand, within PGA1_c10160 at 1051.895 kb on + strand, within PGA1_c10160 at 1051.898 kb on - strand, within PGA1_c10160 at 1051.900 kb on + strand, within PGA1_c10160 at 1051.900 kb on + strand, within PGA1_c10160 at 1051.925 kb on + strand, within PGA1_c10160 at 1051.926 kb on + strand, within PGA1_c10160 at 1051.926 kb on + strand, within PGA1_c10160 at 1051.934 kb on - strand, within PGA1_c10160 at 1051.934 kb on - strand, within PGA1_c10160 at 1051.964 kb on + strand, within PGA1_c10160 at 1051.964 kb on + strand, within PGA1_c10160 at 1051.966 kb on - strand, within PGA1_c10160 at 1051.974 kb on + strand, within PGA1_c10160 at 1052.003 kb on - strand, within PGA1_c10160 at 1052.025 kb on + strand, within PGA1_c10160 at 1052.027 kb on + strand, within PGA1_c10160 at 1052.123 kb on + strand, within PGA1_c10160 at 1052.208 kb on + strand, within PGA1_c10160 at 1052.321 kb on - strand, within PGA1_c10160 at 1052.353 kb on + strand, within PGA1_c10160 at 1052.393 kb on - strand, within PGA1_c10160 at 1052.404 kb on + strand, within PGA1_c10160 at 1052.501 kb on + strand at 1052.568 kb on + strand at 1052.576 kb on - strand at 1052.632 kb on + strand at 1052.638 kb on + strand at 1052.702 kb on + strand at 1052.722 kb on - strand at 1052.776 kb on - strand at 1052.871 kb on + strand, within PGA1_c10170 at 1052.874 kb on - strand, within PGA1_c10170 at 1052.878 kb on - strand, within PGA1_c10170 at 1052.888 kb on - strand, within PGA1_c10170 at 1052.928 kb on + strand, within PGA1_c10170 at 1053.057 kb on + strand, within PGA1_c10170 at 1053.319 kb on + strand, within PGA1_c10170 at 1053.347 kb on - strand, within PGA1_c10170 at 1053.359 kb on + strand, within PGA1_c10170 at 1053.378 kb on + strand, within PGA1_c10170 at 1053.412 kb on + strand, within PGA1_c10170 at 1053.460 kb on + strand, within PGA1_c10170 at 1053.573 kb on - strand, within PGA1_c10170 at 1053.666 kb on - strand, within PGA1_c10170 at 1053.740 kb on + strand at 1053.755 kb on + strand at 1053.775 kb on + strand at 1053.877 kb on - strand at 1053.882 kb on - strand at 1053.932 kb on - strand at 1054.773 kb on + strand, within PGA1_c10180
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.001 mg/ml remove 1,051,677 - PGA1_c10160 0.22 -2.0 1,051,677 - PGA1_c10160 0.22 +0.4 1,051,677 - PGA1_c10160 0.22 -1.4 1,051,679 - PGA1_c10160 0.22 -0.8 1,051,729 - PGA1_c10160 0.26 -0.1 1,051,741 + PGA1_c10160 0.27 +0.2 1,051,759 + PGA1_c10160 0.29 -0.2 1,051,776 + PGA1_c10160 0.30 +0.4 1,051,895 + PGA1_c10160 0.41 -0.7 1,051,895 + PGA1_c10160 0.41 -0.2 1,051,898 - PGA1_c10160 0.41 +0.2 1,051,900 + PGA1_c10160 0.41 +0.8 1,051,900 + PGA1_c10160 0.41 -0.0 1,051,925 + PGA1_c10160 0.43 +0.8 1,051,926 + PGA1_c10160 0.43 -0.2 1,051,926 + PGA1_c10160 0.43 +2.2 1,051,934 - PGA1_c10160 0.44 +0.1 1,051,934 - PGA1_c10160 0.44 -0.5 1,051,964 + PGA1_c10160 0.47 +0.0 1,051,964 + PGA1_c10160 0.47 +0.3 1,051,966 - PGA1_c10160 0.47 +0.2 1,051,974 + PGA1_c10160 0.47 +0.1 1,052,003 - PGA1_c10160 0.50 +0.7 1,052,025 + PGA1_c10160 0.52 -0.2 1,052,027 + PGA1_c10160 0.52 +1.0 1,052,123 + PGA1_c10160 0.60 +0.4 1,052,208 + PGA1_c10160 0.67 +0.4 1,052,321 - PGA1_c10160 0.77 +1.3 1,052,353 + PGA1_c10160 0.80 +0.2 1,052,393 - PGA1_c10160 0.83 +1.0 1,052,404 + PGA1_c10160 0.84 -0.0 1,052,501 + +0.8 1,052,568 + -0.1 1,052,576 - +0.1 1,052,632 + +0.1 1,052,638 + +0.8 1,052,702 + +0.9 1,052,722 - -0.2 1,052,776 - +1.3 1,052,871 + PGA1_c10170 0.17 -0.2 1,052,874 - PGA1_c10170 0.17 +0.3 1,052,878 - PGA1_c10170 0.17 -0.7 1,052,888 - PGA1_c10170 0.18 -0.6 1,052,928 + PGA1_c10170 0.22 -1.5 1,053,057 + PGA1_c10170 0.33 -0.1 1,053,319 + PGA1_c10170 0.55 -0.2 1,053,347 - PGA1_c10170 0.58 -1.4 1,053,359 + PGA1_c10170 0.59 -2.1 1,053,378 + PGA1_c10170 0.60 -1.4 1,053,412 + PGA1_c10170 0.63 -0.8 1,053,460 + PGA1_c10170 0.67 -0.9 1,053,573 - PGA1_c10170 0.77 -1.1 1,053,666 - PGA1_c10170 0.85 -1.2 1,053,740 + -0.3 1,053,755 + -1.5 1,053,775 + +0.9 1,053,877 - -0.5 1,053,882 - +0.7 1,053,932 - +4.0 1,054,773 + PGA1_c10180 0.80 -0.2
Or see this region's nucleotide sequence