Strain Fitness in Dechlorosoma suillum PS around Dsui_3508

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3507 and Dsui_3508 are separated by 146 nucleotidesDsui_3508 and Dsui_3509 are separated by 47 nucleotidesDsui_3509 and Dsui_3510 are separated by 40 nucleotides Dsui_3507: Dsui_3507 - ring-hydroxylating dioxygenase, large terminal subunit, at 3,771,930 to 3,773,039 _3507 Dsui_3508: Dsui_3508 - exodeoxyribonuclease VII, small subunit, at 3,773,186 to 3,773,452 _3508 Dsui_3509: Dsui_3509 - geranylgeranyl pyrophosphate synthase, at 3,773,500 to 3,774,408 _3509 Dsui_3510: Dsui_3510 - 1-deoxy-D-xylulose-5-phosphate synthase, at 3,774,449 to 3,776,305 _3510 Position (kb) 3773 3774Strain fitness (log2 ratio) -1 0 1 2at 3772.232 kb on - strand, within Dsui_3507at 3772.333 kb on - strand, within Dsui_3507at 3772.346 kb on - strand, within Dsui_3507at 3772.361 kb on + strandat 3772.367 kb on + strandat 3772.393 kb on + strand, within Dsui_3507at 3772.429 kb on - strand, within Dsui_3507at 3772.477 kb on + strandat 3772.486 kb on - strand, within Dsui_3507at 3772.592 kb on + strand, within Dsui_3507at 3772.605 kb on - strand, within Dsui_3507at 3772.618 kb on + strand, within Dsui_3507at 3772.669 kb on - strand, within Dsui_3507at 3772.696 kb on + strand, within Dsui_3507at 3772.754 kb on + strand, within Dsui_3507at 3772.765 kb on + strandat 3772.767 kb on + strandat 3772.870 kb on + strand, within Dsui_3507at 3772.878 kb on + strand, within Dsui_3507at 3772.928 kb on + strand, within Dsui_3507at 3772.938 kb on + strandat 3772.947 kb on - strandat 3772.997 kb on - strandat 3773.008 kb on - strandat 3773.020 kb on - strandat 3773.040 kb on + strandat 3773.040 kb on + strandat 3773.048 kb on - strandat 3773.048 kb on - strandat 3773.048 kb on - strandat 3773.123 kb on - strandat 3773.192 kb on + strandat 3773.225 kb on + strand, within Dsui_3508at 3773.346 kb on + strand, within Dsui_3508at 3773.364 kb on - strandat 3773.429 kb on + strandat 3773.447 kb on + strandat 3773.447 kb on + strandat 3773.465 kb on + strandat 3774.379 kb on + strandat 3774.384 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,772,232 - Dsui_3507 0.27 -0.5
3,772,333 - Dsui_3507 0.36 -1.1
3,772,346 - Dsui_3507 0.37 +0.2
3,772,361 + +1.0
3,772,367 + +0.4
3,772,393 + Dsui_3507 0.42 -0.8
3,772,429 - Dsui_3507 0.45 -0.6
3,772,477 + +0.2
3,772,486 - Dsui_3507 0.50 +0.2
3,772,592 + Dsui_3507 0.60 -0.5
3,772,605 - Dsui_3507 0.61 -0.2
3,772,618 + Dsui_3507 0.62 +1.2
3,772,669 - Dsui_3507 0.67 -0.4
3,772,696 + Dsui_3507 0.69 -0.8
3,772,754 + Dsui_3507 0.74 -0.5
3,772,765 + +0.4
3,772,767 + +2.0
3,772,870 + Dsui_3507 0.85 -0.3
3,772,878 + Dsui_3507 0.85 +0.1
3,772,928 + Dsui_3507 0.90 +1.2
3,772,938 + +0.4
3,772,947 - +0.1
3,772,997 - -0.5
3,773,008 - -0.1
3,773,020 - -0.3
3,773,040 + +0.2
3,773,040 + +0.7
3,773,048 - -0.4
3,773,048 - -1.3
3,773,048 - -0.2
3,773,123 - -0.2
3,773,192 + -0.2
3,773,225 + Dsui_3508 0.15 +1.0
3,773,346 + Dsui_3508 0.60 -0.4
3,773,364 - +1.0
3,773,429 + +0.2
3,773,447 + +2.0
3,773,447 + +0.2
3,773,465 + -0.6
3,774,379 + +1.0
3,774,384 + +2.0

Or see this region's nucleotide sequence