Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3032 and Dsui_3033 overlap by 4 nucleotides Dsui_3033 and Dsui_3034 are separated by 372 nucleotides
Dsui_3032: Dsui_3032 - phosphotransacetylase, at 3,243,848 to 3,245,260
_3032
Dsui_3033: Dsui_3033 - acetate kinase, at 3,245,257 to 3,246,450
_3033
Dsui_3034: Dsui_3034 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, at 3,246,823 to 3,249,732
_3034
Position (kb)
3245
3246
3247 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3244.498 kb on + strand, within Dsui_3032 at 3244.524 kb on + strand, within Dsui_3032 at 3244.532 kb on - strand, within Dsui_3032 at 3244.737 kb on + strand, within Dsui_3032 at 3244.798 kb on + strand, within Dsui_3032 at 3244.838 kb on - strand, within Dsui_3032 at 3244.959 kb on - strand, within Dsui_3032 at 3244.959 kb on - strand, within Dsui_3032 at 3245.072 kb on + strand, within Dsui_3032 at 3245.269 kb on + strand at 3245.375 kb on - strand at 3245.394 kb on + strand, within Dsui_3033 at 3245.422 kb on + strand, within Dsui_3033 at 3245.495 kb on + strand, within Dsui_3033 at 3245.503 kb on - strand, within Dsui_3033 at 3245.625 kb on - strand, within Dsui_3033 at 3245.658 kb on - strand, within Dsui_3033 at 3245.734 kb on - strand, within Dsui_3033 at 3245.759 kb on + strand, within Dsui_3033 at 3245.874 kb on - strand, within Dsui_3033 at 3245.889 kb on - strand, within Dsui_3033 at 3245.935 kb on + strand, within Dsui_3033 at 3246.241 kb on - strand, within Dsui_3033 at 3246.299 kb on + strand, within Dsui_3033 at 3246.364 kb on + strand at 3246.372 kb on - strand at 3246.428 kb on + strand at 3246.446 kb on - strand at 3246.507 kb on - strand at 3246.558 kb on - strand at 3246.563 kb on - strand at 3246.564 kb on - strand at 3246.570 kb on + strand at 3246.693 kb on - strand at 3247.108 kb on + strand at 3247.111 kb on - strand at 3247.143 kb on + strand, within Dsui_3034 at 3247.167 kb on - strand, within Dsui_3034 at 3247.269 kb on + strand, within Dsui_3034 at 3247.277 kb on - strand, within Dsui_3034 at 3247.277 kb on - strand, within Dsui_3034 at 3247.428 kb on + strand, within Dsui_3034 at 3247.436 kb on - strand, within Dsui_3034 at 3247.436 kb on - strand, within Dsui_3034
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 3,244,498 + Dsui_3032 0.46 -0.5 3,244,524 + Dsui_3032 0.48 -0.7 3,244,532 - Dsui_3032 0.48 -1.5 3,244,737 + Dsui_3032 0.63 -0.7 3,244,798 + Dsui_3032 0.67 -0.8 3,244,838 - Dsui_3032 0.70 -0.3 3,244,959 - Dsui_3032 0.79 -1.9 3,244,959 - Dsui_3032 0.79 -1.3 3,245,072 + Dsui_3032 0.87 -1.1 3,245,269 + -0.7 3,245,375 - -0.7 3,245,394 + Dsui_3033 0.11 -1.2 3,245,422 + Dsui_3033 0.14 -1.0 3,245,495 + Dsui_3033 0.20 -0.7 3,245,503 - Dsui_3033 0.21 -0.2 3,245,625 - Dsui_3033 0.31 -0.6 3,245,658 - Dsui_3033 0.34 -1.1 3,245,734 - Dsui_3033 0.40 -1.8 3,245,759 + Dsui_3033 0.42 -0.9 3,245,874 - Dsui_3033 0.52 -0.8 3,245,889 - Dsui_3033 0.53 -0.2 3,245,935 + Dsui_3033 0.57 -0.8 3,246,241 - Dsui_3033 0.82 -1.5 3,246,299 + Dsui_3033 0.87 -1.1 3,246,364 + -0.3 3,246,372 - -0.6 3,246,428 + -0.9 3,246,446 - +0.2 3,246,507 - -0.1 3,246,558 - +0.5 3,246,563 - -0.6 3,246,564 - -0.6 3,246,570 + -0.4 3,246,693 - -1.3 3,247,108 + -5.4 3,247,111 - -1.8 3,247,143 + Dsui_3034 0.11 -4.0 3,247,167 - Dsui_3034 0.12 -2.2 3,247,269 + Dsui_3034 0.15 -5.4 3,247,277 - Dsui_3034 0.16 -4.4 3,247,277 - Dsui_3034 0.16 -2.6 3,247,428 + Dsui_3034 0.21 -4.5 3,247,436 - Dsui_3034 0.21 -3.6 3,247,436 - Dsui_3034 0.21 -3.4
Or see this region's nucleotide sequence