Strain Fitness in Dechlorosoma suillum PS around Dsui_3033

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3032 and Dsui_3033 overlap by 4 nucleotidesDsui_3033 and Dsui_3034 are separated by 372 nucleotides Dsui_3032: Dsui_3032 - phosphotransacetylase, at 3,243,848 to 3,245,260 _3032 Dsui_3033: Dsui_3033 - acetate kinase, at 3,245,257 to 3,246,450 _3033 Dsui_3034: Dsui_3034 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, at 3,246,823 to 3,249,732 _3034 Position (kb) 3245 3246 3247Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3244.498 kb on + strand, within Dsui_3032at 3244.524 kb on + strand, within Dsui_3032at 3244.532 kb on - strand, within Dsui_3032at 3244.737 kb on + strand, within Dsui_3032at 3244.798 kb on + strand, within Dsui_3032at 3244.838 kb on - strand, within Dsui_3032at 3244.959 kb on - strand, within Dsui_3032at 3244.959 kb on - strand, within Dsui_3032at 3245.072 kb on + strand, within Dsui_3032at 3245.269 kb on + strandat 3245.375 kb on - strandat 3245.394 kb on + strand, within Dsui_3033at 3245.422 kb on + strand, within Dsui_3033at 3245.495 kb on + strand, within Dsui_3033at 3245.503 kb on - strand, within Dsui_3033at 3245.625 kb on - strand, within Dsui_3033at 3245.658 kb on - strand, within Dsui_3033at 3245.734 kb on - strand, within Dsui_3033at 3245.759 kb on + strand, within Dsui_3033at 3245.874 kb on - strand, within Dsui_3033at 3245.889 kb on - strand, within Dsui_3033at 3245.935 kb on + strand, within Dsui_3033at 3246.241 kb on - strand, within Dsui_3033at 3246.299 kb on + strand, within Dsui_3033at 3246.364 kb on + strandat 3246.372 kb on - strandat 3246.428 kb on + strandat 3246.446 kb on - strandat 3246.507 kb on - strandat 3246.558 kb on - strandat 3246.563 kb on - strandat 3246.564 kb on - strandat 3246.570 kb on + strandat 3246.693 kb on - strandat 3247.108 kb on + strandat 3247.111 kb on - strandat 3247.143 kb on + strand, within Dsui_3034at 3247.167 kb on - strand, within Dsui_3034at 3247.269 kb on + strand, within Dsui_3034at 3247.277 kb on - strand, within Dsui_3034at 3247.277 kb on - strand, within Dsui_3034at 3247.428 kb on + strand, within Dsui_3034at 3247.436 kb on - strand, within Dsui_3034at 3247.436 kb on - strand, within Dsui_3034

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,244,498 + Dsui_3032 0.46 -0.5
3,244,524 + Dsui_3032 0.48 -0.7
3,244,532 - Dsui_3032 0.48 -1.5
3,244,737 + Dsui_3032 0.63 -0.7
3,244,798 + Dsui_3032 0.67 -0.8
3,244,838 - Dsui_3032 0.70 -0.3
3,244,959 - Dsui_3032 0.79 -1.9
3,244,959 - Dsui_3032 0.79 -1.3
3,245,072 + Dsui_3032 0.87 -1.1
3,245,269 + -0.7
3,245,375 - -0.7
3,245,394 + Dsui_3033 0.11 -1.2
3,245,422 + Dsui_3033 0.14 -1.0
3,245,495 + Dsui_3033 0.20 -0.7
3,245,503 - Dsui_3033 0.21 -0.2
3,245,625 - Dsui_3033 0.31 -0.6
3,245,658 - Dsui_3033 0.34 -1.1
3,245,734 - Dsui_3033 0.40 -1.8
3,245,759 + Dsui_3033 0.42 -0.9
3,245,874 - Dsui_3033 0.52 -0.8
3,245,889 - Dsui_3033 0.53 -0.2
3,245,935 + Dsui_3033 0.57 -0.8
3,246,241 - Dsui_3033 0.82 -1.5
3,246,299 + Dsui_3033 0.87 -1.1
3,246,364 + -0.3
3,246,372 - -0.6
3,246,428 + -0.9
3,246,446 - +0.2
3,246,507 - -0.1
3,246,558 - +0.5
3,246,563 - -0.6
3,246,564 - -0.6
3,246,570 + -0.4
3,246,693 - -1.3
3,247,108 + -5.4
3,247,111 - -1.8
3,247,143 + Dsui_3034 0.11 -4.0
3,247,167 - Dsui_3034 0.12 -2.2
3,247,269 + Dsui_3034 0.15 -5.4
3,247,277 - Dsui_3034 0.16 -4.4
3,247,277 - Dsui_3034 0.16 -2.6
3,247,428 + Dsui_3034 0.21 -4.5
3,247,436 - Dsui_3034 0.21 -3.6
3,247,436 - Dsui_3034 0.21 -3.4

Or see this region's nucleotide sequence