Strain Fitness in Dechlorosoma suillum PS around Dsui_3032

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3031 and Dsui_3032 are separated by 33 nucleotidesDsui_3032 and Dsui_3033 overlap by 4 nucleotides Dsui_3031: Dsui_3031 - enoyl-(acyl-carrier-protein) reductase (NADH), at 3,243,050 to 3,243,814 _3031 Dsui_3032: Dsui_3032 - phosphotransacetylase, at 3,243,848 to 3,245,260 _3032 Dsui_3033: Dsui_3033 - acetate kinase, at 3,245,257 to 3,246,450 _3033 Position (kb) 3243 3244 3245 3246Strain fitness (log2 ratio) -2 -1 0 1at 3242.993 kb on + strandat 3242.994 kb on + strandat 3243.001 kb on - strandat 3243.009 kb on - strandat 3243.042 kb on - strandat 3243.097 kb on + strandat 3243.103 kb on + strandat 3243.118 kb on - strandat 3243.118 kb on - strandat 3243.118 kb on - strandat 3243.118 kb on - strandat 3243.284 kb on + strand, within Dsui_3031at 3243.321 kb on + strand, within Dsui_3031at 3243.359 kb on + strand, within Dsui_3031at 3243.367 kb on - strand, within Dsui_3031at 3243.380 kb on + strand, within Dsui_3031at 3243.441 kb on + strand, within Dsui_3031at 3243.495 kb on + strand, within Dsui_3031at 3243.508 kb on - strandat 3243.684 kb on + strand, within Dsui_3031at 3243.825 kb on - strandat 3243.851 kb on - strandat 3243.857 kb on + strandat 3243.915 kb on + strandat 3244.034 kb on + strand, within Dsui_3032at 3244.042 kb on - strand, within Dsui_3032at 3244.498 kb on + strand, within Dsui_3032at 3244.524 kb on + strand, within Dsui_3032at 3244.532 kb on - strand, within Dsui_3032at 3244.737 kb on + strand, within Dsui_3032at 3244.798 kb on + strand, within Dsui_3032at 3244.838 kb on - strand, within Dsui_3032at 3244.959 kb on - strand, within Dsui_3032at 3244.959 kb on - strand, within Dsui_3032at 3245.072 kb on + strand, within Dsui_3032at 3245.269 kb on + strandat 3245.375 kb on - strandat 3245.394 kb on + strand, within Dsui_3033at 3245.422 kb on + strand, within Dsui_3033at 3245.495 kb on + strand, within Dsui_3033at 3245.503 kb on - strand, within Dsui_3033at 3245.625 kb on - strand, within Dsui_3033at 3245.658 kb on - strand, within Dsui_3033at 3245.734 kb on - strand, within Dsui_3033at 3245.759 kb on + strand, within Dsui_3033at 3245.874 kb on - strand, within Dsui_3033at 3245.889 kb on - strand, within Dsui_3033at 3245.935 kb on + strand, within Dsui_3033at 3246.241 kb on - strand, within Dsui_3033

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,242,993 + -0.3
3,242,994 + -0.3
3,243,001 - +0.9
3,243,009 - -1.4
3,243,042 - -0.1
3,243,097 + -0.5
3,243,103 + -0.2
3,243,118 - -0.4
3,243,118 - -0.4
3,243,118 - +0.3
3,243,118 - -0.4
3,243,284 + Dsui_3031 0.31 -0.5
3,243,321 + Dsui_3031 0.35 +0.0
3,243,359 + Dsui_3031 0.40 -0.6
3,243,367 - Dsui_3031 0.41 +0.2
3,243,380 + Dsui_3031 0.43 -0.7
3,243,441 + Dsui_3031 0.51 -0.4
3,243,495 + Dsui_3031 0.58 -0.5
3,243,508 - +0.3
3,243,684 + Dsui_3031 0.83 -0.5
3,243,825 - -0.7
3,243,851 - -0.7
3,243,857 + -1.1
3,243,915 + -0.6
3,244,034 + Dsui_3032 0.13 -1.2
3,244,042 - Dsui_3032 0.14 -1.2
3,244,498 + Dsui_3032 0.46 -0.5
3,244,524 + Dsui_3032 0.48 -0.7
3,244,532 - Dsui_3032 0.48 -1.5
3,244,737 + Dsui_3032 0.63 -0.7
3,244,798 + Dsui_3032 0.67 -0.8
3,244,838 - Dsui_3032 0.70 -0.3
3,244,959 - Dsui_3032 0.79 -1.9
3,244,959 - Dsui_3032 0.79 -1.3
3,245,072 + Dsui_3032 0.87 -1.1
3,245,269 + -0.7
3,245,375 - -0.7
3,245,394 + Dsui_3033 0.11 -1.2
3,245,422 + Dsui_3033 0.14 -1.0
3,245,495 + Dsui_3033 0.20 -0.7
3,245,503 - Dsui_3033 0.21 -0.2
3,245,625 - Dsui_3033 0.31 -0.6
3,245,658 - Dsui_3033 0.34 -1.1
3,245,734 - Dsui_3033 0.40 -1.8
3,245,759 + Dsui_3033 0.42 -0.9
3,245,874 - Dsui_3033 0.52 -0.8
3,245,889 - Dsui_3033 0.53 -0.2
3,245,935 + Dsui_3033 0.57 -0.8
3,246,241 - Dsui_3033 0.82 -1.5

Or see this region's nucleotide sequence