Strain Fitness in Dechlorosoma suillum PS around Dsui_2718

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2714 and Dsui_2715 are separated by 14 nucleotidesDsui_2715 and Dsui_2716 are separated by 36 nucleotidesDsui_2716 and Dsui_2717 are separated by 143 nucleotidesDsui_2717 and Dsui_2718 are separated by 115 nucleotidesDsui_2718 and Dsui_2719 are separated by 186 nucleotidesDsui_2719 and Dsui_2720 are separated by 164 nucleotides Dsui_2714: Dsui_2714 - tRNA-His, at 2,871,102 to 2,871,177 _2714 Dsui_2715: Dsui_2715 - tRNA-Arg, at 2,871,192 to 2,871,268 _2715 Dsui_2716: Dsui_2716 - tRNA-Pro, at 2,871,305 to 2,871,381 _2716 Dsui_2717: Dsui_2717 - RNA polymerase-binding protein DksA, at 2,871,525 to 2,871,950 _2717 Dsui_2718: Dsui_2718 - polyribonucleotide nucleotidyltransferase, at 2,872,066 to 2,874,189 _2718 Dsui_2719: Dsui_2719 - ribosomal protein S15, at 2,874,376 to 2,874,645 _2719 Dsui_2720: Dsui_2720 - tRNA pseudouridine 55 synthase, at 2,874,810 to 2,875,712 _2720 Position (kb) 2872 2873 2874 2875Strain fitness (log2 ratio) -2 -1 0 1at 2871.295 kb on - strandat 2871.528 kb on + strandat 2871.585 kb on + strand, within Dsui_2717at 2871.644 kb on + strand, within Dsui_2717at 2871.669 kb on + strand, within Dsui_2717at 2871.696 kb on + strand, within Dsui_2717at 2871.742 kb on + strand, within Dsui_2717at 2871.870 kb on + strand, within Dsui_2717at 2872.321 kb on - strand, within Dsui_2718at 2872.327 kb on - strand, within Dsui_2718at 2874.240 kb on + strandat 2874.305 kb on - strandat 2874.334 kb on - strandat 2874.807 kb on + strandat 2874.814 kb on - strandat 2874.815 kb on - strandat 2874.815 kb on - strandat 2874.815 kb on - strandat 2874.815 kb on - strandat 2874.852 kb on - strandat 2874.869 kb on + strandat 2874.947 kb on + strand, within Dsui_2720at 2874.950 kb on - strand, within Dsui_2720at 2875.037 kb on - strand, within Dsui_2720at 2875.063 kb on + strand, within Dsui_2720at 2875.063 kb on + strand, within Dsui_2720at 2875.110 kb on + strand, within Dsui_2720at 2875.137 kb on + strandat 2875.145 kb on - strand, within Dsui_2720at 2875.166 kb on + strand, within Dsui_2720at 2875.166 kb on + strand, within Dsui_2720

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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2,871,295 - +0.2
2,871,528 + -1.8
2,871,585 + Dsui_2717 0.14 -1.3
2,871,644 + Dsui_2717 0.28 -1.7
2,871,669 + Dsui_2717 0.34 +0.0
2,871,696 + Dsui_2717 0.40 +0.0
2,871,742 + Dsui_2717 0.51 -2.5
2,871,870 + Dsui_2717 0.81 -1.7
2,872,321 - Dsui_2718 0.12 -0.9
2,872,327 - Dsui_2718 0.12 -1.1
2,874,240 + -2.1
2,874,305 - +0.7
2,874,334 - -0.1
2,874,807 + -0.9
2,874,814 - +0.0
2,874,815 - +0.8
2,874,815 - -0.1
2,874,815 - -0.5
2,874,815 - -0.2
2,874,852 - -0.1
2,874,869 + -0.5
2,874,947 + Dsui_2720 0.15 -0.9
2,874,950 - Dsui_2720 0.16 -0.1
2,875,037 - Dsui_2720 0.25 -0.3
2,875,063 + Dsui_2720 0.28 -1.6
2,875,063 + Dsui_2720 0.28 +0.4
2,875,110 + Dsui_2720 0.33 -0.4
2,875,137 + +0.8
2,875,145 - Dsui_2720 0.37 -0.5
2,875,166 + Dsui_2720 0.39 -1.2
2,875,166 + Dsui_2720 0.39 -1.9

Or see this region's nucleotide sequence