Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2714 and Dsui_2715 are separated by 14 nucleotides Dsui_2715 and Dsui_2716 are separated by 36 nucleotides Dsui_2716 and Dsui_2717 are separated by 143 nucleotides Dsui_2717 and Dsui_2718 are separated by 115 nucleotides Dsui_2718 and Dsui_2719 are separated by 186 nucleotides Dsui_2719 and Dsui_2720 are separated by 164 nucleotides
Dsui_2714: Dsui_2714 - tRNA-His, at 2,871,102 to 2,871,177
_2714
Dsui_2715: Dsui_2715 - tRNA-Arg, at 2,871,192 to 2,871,268
_2715
Dsui_2716: Dsui_2716 - tRNA-Pro, at 2,871,305 to 2,871,381
_2716
Dsui_2717: Dsui_2717 - RNA polymerase-binding protein DksA, at 2,871,525 to 2,871,950
_2717
Dsui_2718: Dsui_2718 - polyribonucleotide nucleotidyltransferase, at 2,872,066 to 2,874,189
_2718
Dsui_2719: Dsui_2719 - ribosomal protein S15, at 2,874,376 to 2,874,645
_2719
Dsui_2720: Dsui_2720 - tRNA pseudouridine 55 synthase, at 2,874,810 to 2,875,712
_2720
Position (kb)
2872
2873
2874
2875 Strain fitness (log2 ratio)
-2
-1
0
1 at 2871.295 kb on - strand at 2871.528 kb on + strand at 2871.585 kb on + strand, within Dsui_2717 at 2871.644 kb on + strand, within Dsui_2717 at 2871.669 kb on + strand, within Dsui_2717 at 2871.696 kb on + strand, within Dsui_2717 at 2871.742 kb on + strand, within Dsui_2717 at 2871.870 kb on + strand, within Dsui_2717 at 2872.321 kb on - strand, within Dsui_2718 at 2872.327 kb on - strand, within Dsui_2718 at 2874.240 kb on + strand at 2874.305 kb on - strand at 2874.334 kb on - strand at 2874.807 kb on + strand at 2874.814 kb on - strand at 2874.815 kb on - strand at 2874.815 kb on - strand at 2874.815 kb on - strand at 2874.815 kb on - strand at 2874.852 kb on - strand at 2874.869 kb on + strand at 2874.947 kb on + strand, within Dsui_2720 at 2874.950 kb on - strand, within Dsui_2720 at 2875.037 kb on - strand, within Dsui_2720 at 2875.063 kb on + strand, within Dsui_2720 at 2875.063 kb on + strand, within Dsui_2720 at 2875.110 kb on + strand, within Dsui_2720 at 2875.137 kb on + strand at 2875.145 kb on - strand, within Dsui_2720 at 2875.166 kb on + strand, within Dsui_2720 at 2875.166 kb on + strand, within Dsui_2720
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 2,871,295 - +0.2 2,871,528 + -1.8 2,871,585 + Dsui_2717 0.14 -1.3 2,871,644 + Dsui_2717 0.28 -1.7 2,871,669 + Dsui_2717 0.34 +0.0 2,871,696 + Dsui_2717 0.40 +0.0 2,871,742 + Dsui_2717 0.51 -2.5 2,871,870 + Dsui_2717 0.81 -1.7 2,872,321 - Dsui_2718 0.12 -0.9 2,872,327 - Dsui_2718 0.12 -1.1 2,874,240 + -2.1 2,874,305 - +0.7 2,874,334 - -0.1 2,874,807 + -0.9 2,874,814 - +0.0 2,874,815 - +0.8 2,874,815 - -0.1 2,874,815 - -0.5 2,874,815 - -0.2 2,874,852 - -0.1 2,874,869 + -0.5 2,874,947 + Dsui_2720 0.15 -0.9 2,874,950 - Dsui_2720 0.16 -0.1 2,875,037 - Dsui_2720 0.25 -0.3 2,875,063 + Dsui_2720 0.28 -1.6 2,875,063 + Dsui_2720 0.28 +0.4 2,875,110 + Dsui_2720 0.33 -0.4 2,875,137 + +0.8 2,875,145 - Dsui_2720 0.37 -0.5 2,875,166 + Dsui_2720 0.39 -1.2 2,875,166 + Dsui_2720 0.39 -1.9
Or see this region's nucleotide sequence