Strain Fitness in Dechlorosoma suillum PS around Dsui_2601

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2599 and Dsui_2600 are separated by 263 nucleotidesDsui_2600 and Dsui_2601 are separated by 371 nucleotides Dsui_2599: Dsui_2599 - hypothetical protein, at 2,754,986 to 2,755,663 _2599 Dsui_2600: Dsui_2600 - hypothetical protein, at 2,755,927 to 2,756,136 _2600 Dsui_2601: Dsui_2601 - hypothetical protein, at 2,756,508 to 2,756,870 _2601 Position (kb) 2756 2757Strain fitness (log2 ratio) -2 -1 0 1 2at 2755.628 kb on + strandat 2755.695 kb on - strandat 2755.890 kb on + strandat 2755.890 kb on + strandat 2755.971 kb on + strand, within Dsui_2600at 2755.979 kb on - strand, within Dsui_2600at 2756.000 kb on - strand, within Dsui_2600at 2756.008 kb on - strand, within Dsui_2600at 2756.023 kb on + strand, within Dsui_2600at 2756.070 kb on + strandat 2756.112 kb on + strand, within Dsui_2600at 2756.112 kb on + strand, within Dsui_2600at 2756.126 kb on - strandat 2756.265 kb on + strandat 2756.278 kb on + strandat 2756.323 kb on + strandat 2756.415 kb on - strandat 2756.430 kb on + strandat 2756.533 kb on + strandat 2756.583 kb on - strand, within Dsui_2601at 2756.777 kb on + strand, within Dsui_2601at 2756.785 kb on - strandat 2756.828 kb on - strand, within Dsui_2601at 2756.834 kb on + strandat 2756.865 kb on + strandat 2756.875 kb on + strandat 2757.124 kb on - strandat 2757.264 kb on + strandat 2757.516 kb on - strandat 2757.527 kb on + strandat 2757.724 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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2,755,628 + +0.6
2,755,695 - +1.3
2,755,890 + -0.3
2,755,890 + -1.9
2,755,971 + Dsui_2600 0.21 +0.0
2,755,979 - Dsui_2600 0.25 +0.6
2,756,000 - Dsui_2600 0.35 -0.3
2,756,008 - Dsui_2600 0.39 +0.6
2,756,023 + Dsui_2600 0.46 -0.9
2,756,070 + +2.6
2,756,112 + Dsui_2600 0.88 +0.4
2,756,112 + Dsui_2600 0.88 +1.6
2,756,126 - +0.8
2,756,265 + -0.1
2,756,278 + -0.7
2,756,323 + +0.0
2,756,415 - -1.4
2,756,430 + +0.4
2,756,533 + +1.2
2,756,583 - Dsui_2601 0.21 -1.7
2,756,777 + Dsui_2601 0.74 -0.4
2,756,785 - +0.0
2,756,828 - Dsui_2601 0.88 -0.9
2,756,834 + +0.4
2,756,865 + -1.4
2,756,875 + +0.9
2,757,124 - -2.0
2,757,264 + -0.2
2,757,516 - +0.6
2,757,527 + -0.8
2,757,724 - +0.6

Or see this region's nucleotide sequence