Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2257 and Dsui_2258 are separated by 135 nucleotides Dsui_2258 and Dsui_2259 are separated by 85 nucleotides Dsui_2259 and Dsui_2260 are separated by 348 nucleotides
Dsui_2257: Dsui_2257 - transcriptional regulator, at 2,406,494 to 2,407,450
_2257
Dsui_2258: Dsui_2258 - cupin domain-containing protein, at 2,407,586 to 2,407,921
_2258
Dsui_2259: Dsui_2259 - hypothetical protein, at 2,408,007 to 2,408,198
_2259
Dsui_2260: Dsui_2260 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,408,547 to 2,410,013
_2260
Position (kb)
2407
2408 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2406.597 kb on + strand, within Dsui_2257 at 2406.706 kb on + strand, within Dsui_2257 at 2406.718 kb on - strand at 2406.742 kb on + strand, within Dsui_2257 at 2406.742 kb on + strand, within Dsui_2257 at 2406.760 kb on + strand, within Dsui_2257 at 2406.763 kb on - strand at 2406.785 kb on + strand, within Dsui_2257 at 2406.793 kb on - strand at 2406.829 kb on + strand, within Dsui_2257 at 2406.870 kb on + strand, within Dsui_2257 at 2406.875 kb on + strand, within Dsui_2257 at 2406.878 kb on + strand, within Dsui_2257 at 2406.878 kb on + strand, within Dsui_2257 at 2406.878 kb on - strand at 2406.878 kb on - strand at 2406.900 kb on + strand, within Dsui_2257 at 2406.926 kb on + strand, within Dsui_2257 at 2407.208 kb on + strand, within Dsui_2257 at 2407.284 kb on + strand, within Dsui_2257 at 2407.292 kb on - strand at 2407.356 kb on + strand at 2407.455 kb on + strand at 2407.513 kb on - strand at 2407.580 kb on - strand at 2407.614 kb on - strand at 2407.627 kb on + strand, within Dsui_2258 at 2407.982 kb on - strand at 2408.011 kb on - strand at 2408.059 kb on - strand, within Dsui_2259 at 2408.157 kb on - strand, within Dsui_2259 at 2408.191 kb on - strand at 2408.193 kb on - strand at 2408.590 kb on - strand at 2408.634 kb on + strand at 2408.639 kb on + strand at 2408.686 kb on - strand at 2408.766 kb on + strand at 2408.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 2,406,597 + Dsui_2257 0.11 +0.8 2,406,706 + Dsui_2257 0.22 -0.3 2,406,718 - +3.0 2,406,742 + Dsui_2257 0.26 -0.3 2,406,742 + Dsui_2257 0.26 +0.3 2,406,760 + Dsui_2257 0.28 -1.1 2,406,763 - +0.0 2,406,785 + Dsui_2257 0.30 +0.1 2,406,793 - -0.6 2,406,829 + Dsui_2257 0.35 +0.2 2,406,870 + Dsui_2257 0.39 +0.2 2,406,875 + Dsui_2257 0.40 +0.7 2,406,878 + Dsui_2257 0.40 +1.4 2,406,878 + Dsui_2257 0.40 -0.9 2,406,878 - +0.4 2,406,878 - +2.0 2,406,900 + Dsui_2257 0.42 -0.8 2,406,926 + Dsui_2257 0.45 -1.8 2,407,208 + Dsui_2257 0.75 -1.3 2,407,284 + Dsui_2257 0.83 +0.0 2,407,292 - +0.0 2,407,356 + +0.0 2,407,455 + +1.4 2,407,513 - -0.0 2,407,580 - +0.1 2,407,614 - -0.3 2,407,627 + Dsui_2258 0.12 +0.9 2,407,982 - +0.2 2,408,011 - +0.0 2,408,059 - Dsui_2259 0.27 -1.1 2,408,157 - Dsui_2259 0.78 -1.1 2,408,191 - +0.4 2,408,193 - -1.1 2,408,590 - +1.4 2,408,634 + +0.0 2,408,639 + +0.4 2,408,686 - +0.0 2,408,766 + +2.0 2,408,892 - +2.0
Or see this region's nucleotide sequence