Strain Fitness in Dechlorosoma suillum PS around Dsui_2257

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2256 and Dsui_2257 are separated by 134 nucleotidesDsui_2257 and Dsui_2258 are separated by 135 nucleotidesDsui_2258 and Dsui_2259 are separated by 85 nucleotides Dsui_2256: Dsui_2256 - flavodoxin reductase family protein, at 2,405,583 to 2,406,359 _2256 Dsui_2257: Dsui_2257 - transcriptional regulator, at 2,406,494 to 2,407,450 _2257 Dsui_2258: Dsui_2258 - cupin domain-containing protein, at 2,407,586 to 2,407,921 _2258 Dsui_2259: Dsui_2259 - hypothetical protein, at 2,408,007 to 2,408,198 _2259 Position (kb) 2406 2407 2408Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2405.653 kb on - strandat 2405.714 kb on - strand, within Dsui_2256at 2405.905 kb on - strand, within Dsui_2256at 2405.905 kb on - strand, within Dsui_2256at 2405.905 kb on - strand, within Dsui_2256at 2405.975 kb on - strand, within Dsui_2256at 2406.130 kb on - strand, within Dsui_2256at 2406.130 kb on - strand, within Dsui_2256at 2406.157 kb on - strand, within Dsui_2256at 2406.230 kb on - strand, within Dsui_2256at 2406.367 kb on - strandat 2406.503 kb on + strandat 2406.597 kb on + strand, within Dsui_2257at 2406.706 kb on + strand, within Dsui_2257at 2406.718 kb on - strandat 2406.742 kb on + strand, within Dsui_2257at 2406.742 kb on + strand, within Dsui_2257at 2406.760 kb on + strand, within Dsui_2257at 2406.763 kb on - strandat 2406.785 kb on + strand, within Dsui_2257at 2406.793 kb on - strandat 2406.829 kb on + strand, within Dsui_2257at 2406.870 kb on + strand, within Dsui_2257at 2406.875 kb on + strand, within Dsui_2257at 2406.878 kb on + strand, within Dsui_2257at 2406.878 kb on + strand, within Dsui_2257at 2406.878 kb on - strandat 2406.878 kb on - strandat 2406.900 kb on + strand, within Dsui_2257at 2406.926 kb on + strand, within Dsui_2257at 2407.208 kb on + strand, within Dsui_2257at 2407.284 kb on + strand, within Dsui_2257at 2407.292 kb on - strandat 2407.356 kb on + strandat 2407.455 kb on + strandat 2407.513 kb on - strandat 2407.580 kb on - strandat 2407.614 kb on - strandat 2407.627 kb on + strand, within Dsui_2258at 2407.982 kb on - strandat 2408.011 kb on - strandat 2408.059 kb on - strand, within Dsui_2259at 2408.157 kb on - strand, within Dsui_2259at 2408.191 kb on - strandat 2408.193 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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2,405,653 - -0.2
2,405,714 - Dsui_2256 0.17 -0.5
2,405,905 - Dsui_2256 0.41 +0.0
2,405,905 - Dsui_2256 0.41 -1.4
2,405,905 - Dsui_2256 0.41 -1.3
2,405,975 - Dsui_2256 0.50 +0.1
2,406,130 - Dsui_2256 0.70 +0.8
2,406,130 - Dsui_2256 0.70 -0.9
2,406,157 - Dsui_2256 0.74 -0.2
2,406,230 - Dsui_2256 0.83 -0.2
2,406,367 - -0.4
2,406,503 + +0.6
2,406,597 + Dsui_2257 0.11 +0.8
2,406,706 + Dsui_2257 0.22 -0.3
2,406,718 - +3.0
2,406,742 + Dsui_2257 0.26 -0.3
2,406,742 + Dsui_2257 0.26 +0.3
2,406,760 + Dsui_2257 0.28 -1.1
2,406,763 - +0.0
2,406,785 + Dsui_2257 0.30 +0.1
2,406,793 - -0.6
2,406,829 + Dsui_2257 0.35 +0.2
2,406,870 + Dsui_2257 0.39 +0.2
2,406,875 + Dsui_2257 0.40 +0.7
2,406,878 + Dsui_2257 0.40 +1.4
2,406,878 + Dsui_2257 0.40 -0.9
2,406,878 - +0.4
2,406,878 - +2.0
2,406,900 + Dsui_2257 0.42 -0.8
2,406,926 + Dsui_2257 0.45 -1.8
2,407,208 + Dsui_2257 0.75 -1.3
2,407,284 + Dsui_2257 0.83 +0.0
2,407,292 - +0.0
2,407,356 + +0.0
2,407,455 + +1.4
2,407,513 - -0.0
2,407,580 - +0.1
2,407,614 - -0.3
2,407,627 + Dsui_2258 0.12 +0.9
2,407,982 - +0.2
2,408,011 - +0.0
2,408,059 - Dsui_2259 0.27 -1.1
2,408,157 - Dsui_2259 0.78 -1.1
2,408,191 - +0.4
2,408,193 - -1.1

Or see this region's nucleotide sequence