Strain Fitness in Dechlorosoma suillum PS around Dsui_2226

Experiment: Anaero. lactate (C), nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2224 and Dsui_2225 are separated by 170 nucleotidesDsui_2225 and Dsui_2226 are separated by 229 nucleotidesDsui_2226 and Dsui_2227 are separated by 33 nucleotidesDsui_2227 and Dsui_2228 are separated by 75 nucleotides Dsui_2224: Dsui_2224 - hypothetical protein, at 2,366,271 to 2,366,747 _2224 Dsui_2225: Dsui_2225 - hypothetical protein, at 2,366,918 to 2,367,067 _2225 Dsui_2226: Dsui_2226 - DNA-binding domain-containing protein, AraC-type, at 2,367,297 to 2,368,181 _2226 Dsui_2227: Dsui_2227 - NADH-quinone oxidoreductase, B subunit, at 2,368,215 to 2,368,736 _2227 Dsui_2228: Dsui_2228 - Zn-dependent alcohol dehydrogenase, at 2,368,812 to 2,369,834 _2228 Position (kb) 2367 2368 2369Strain fitness (log2 ratio) -2 -1 0 1 2at 2366.344 kb on + strand, within Dsui_2224at 2366.431 kb on - strand, within Dsui_2224at 2366.632 kb on + strand, within Dsui_2224at 2366.632 kb on + strand, within Dsui_2224at 2366.640 kb on - strandat 2366.691 kb on - strandat 2366.741 kb on + strandat 2366.777 kb on + strandat 2366.854 kb on - strandat 2366.894 kb on - strandat 2367.117 kb on + strandat 2367.127 kb on + strandat 2367.138 kb on + strandat 2367.343 kb on + strandat 2367.491 kb on + strand, within Dsui_2226at 2367.492 kb on + strand, within Dsui_2226at 2367.510 kb on - strandat 2367.519 kb on + strand, within Dsui_2226at 2367.524 kb on + strand, within Dsui_2226at 2367.527 kb on - strand, within Dsui_2226at 2367.527 kb on - strand, within Dsui_2226at 2367.533 kb on - strandat 2367.629 kb on + strand, within Dsui_2226at 2367.728 kb on - strandat 2367.748 kb on + strandat 2367.839 kb on - strandat 2367.840 kb on - strandat 2367.872 kb on - strandat 2368.092 kb on - strandat 2368.123 kb on + strandat 2368.225 kb on + strandat 2368.225 kb on + strandat 2368.284 kb on - strandat 2368.424 kb on - strand, within Dsui_2227at 2368.508 kb on + strandat 2368.544 kb on + strandat 2368.550 kb on + strandat 2368.563 kb on + strand, within Dsui_2227at 2368.797 kb on - strandat 2368.797 kb on - strandat 2368.849 kb on + strandat 2368.894 kb on + strandat 2368.894 kb on + strandat 2368.894 kb on + strandat 2368.902 kb on - strandat 2368.902 kb on - strandat 2368.975 kb on - strand, within Dsui_2228at 2368.992 kb on - strandat 2369.084 kb on - strandat 2369.142 kb on - strandat 2369.142 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
remove
2,366,344 + Dsui_2224 0.15 -0.8
2,366,431 - Dsui_2224 0.34 -1.3
2,366,632 + Dsui_2224 0.76 -1.2
2,366,632 + Dsui_2224 0.76 +0.1
2,366,640 - +2.1
2,366,691 - +2.6
2,366,741 + +0.5
2,366,777 + -0.8
2,366,854 - +0.1
2,366,894 - +0.5
2,367,117 + -2.5
2,367,127 + +0.7
2,367,138 + +1.1
2,367,343 + +0.7
2,367,491 + Dsui_2226 0.22 -0.3
2,367,492 + Dsui_2226 0.22 -1.0
2,367,510 - +0.5
2,367,519 + Dsui_2226 0.25 -0.3
2,367,524 + Dsui_2226 0.26 -0.5
2,367,527 - Dsui_2226 0.26 -0.2
2,367,527 - Dsui_2226 0.26 -1.6
2,367,533 - +1.1
2,367,629 + Dsui_2226 0.38 +0.1
2,367,728 - +1.1
2,367,748 + +2.1
2,367,839 - +1.1
2,367,840 - +2.1
2,367,872 - +0.5
2,368,092 - +1.1
2,368,123 + -0.4
2,368,225 + -0.8
2,368,225 + -1.4
2,368,284 - +2.1
2,368,424 - Dsui_2227 0.40 +0.1
2,368,508 + +0.5
2,368,544 + +0.5
2,368,550 + +1.1
2,368,563 + Dsui_2227 0.67 -0.4
2,368,797 - +0.5
2,368,797 - -0.5
2,368,849 + +0.5
2,368,894 + +2.1
2,368,894 + -0.3
2,368,894 + +1.5
2,368,902 - +2.1
2,368,902 - -0.4
2,368,975 - Dsui_2228 0.16 +0.8
2,368,992 - +0.7
2,369,084 - +1.3
2,369,142 - +2.1
2,369,142 - +0.7

Or see this region's nucleotide sequence