Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2224 and Dsui_2225 are separated by 170 nucleotides Dsui_2225 and Dsui_2226 are separated by 229 nucleotides Dsui_2226 and Dsui_2227 are separated by 33 nucleotides Dsui_2227 and Dsui_2228 are separated by 75 nucleotides
Dsui_2224: Dsui_2224 - hypothetical protein, at 2,366,271 to 2,366,747
_2224
Dsui_2225: Dsui_2225 - hypothetical protein, at 2,366,918 to 2,367,067
_2225
Dsui_2226: Dsui_2226 - DNA-binding domain-containing protein, AraC-type, at 2,367,297 to 2,368,181
_2226
Dsui_2227: Dsui_2227 - NADH-quinone oxidoreductase, B subunit, at 2,368,215 to 2,368,736
_2227
Dsui_2228: Dsui_2228 - Zn-dependent alcohol dehydrogenase, at 2,368,812 to 2,369,834
_2228
Position (kb)
2367
2368
2369 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2366.344 kb on + strand, within Dsui_2224 at 2366.431 kb on - strand, within Dsui_2224 at 2366.632 kb on + strand, within Dsui_2224 at 2366.632 kb on + strand, within Dsui_2224 at 2366.640 kb on - strand at 2366.691 kb on - strand at 2366.741 kb on + strand at 2366.777 kb on + strand at 2366.854 kb on - strand at 2366.894 kb on - strand at 2367.117 kb on + strand at 2367.127 kb on + strand at 2367.138 kb on + strand at 2367.343 kb on + strand at 2367.491 kb on + strand, within Dsui_2226 at 2367.492 kb on + strand, within Dsui_2226 at 2367.510 kb on - strand at 2367.519 kb on + strand, within Dsui_2226 at 2367.524 kb on + strand, within Dsui_2226 at 2367.527 kb on - strand, within Dsui_2226 at 2367.527 kb on - strand, within Dsui_2226 at 2367.533 kb on - strand at 2367.629 kb on + strand, within Dsui_2226 at 2367.728 kb on - strand at 2367.748 kb on + strand at 2367.839 kb on - strand at 2367.840 kb on - strand at 2367.872 kb on - strand at 2368.092 kb on - strand at 2368.123 kb on + strand at 2368.225 kb on + strand at 2368.225 kb on + strand at 2368.284 kb on - strand at 2368.424 kb on - strand, within Dsui_2227 at 2368.508 kb on + strand at 2368.544 kb on + strand at 2368.550 kb on + strand at 2368.563 kb on + strand, within Dsui_2227 at 2368.797 kb on - strand at 2368.797 kb on - strand at 2368.849 kb on + strand at 2368.894 kb on + strand at 2368.894 kb on + strand at 2368.894 kb on + strand at 2368.902 kb on - strand at 2368.902 kb on - strand at 2368.975 kb on - strand, within Dsui_2228 at 2368.992 kb on - strand at 2369.084 kb on - strand at 2369.142 kb on - strand at 2369.142 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 2,366,344 + Dsui_2224 0.15 -0.8 2,366,431 - Dsui_2224 0.34 -1.3 2,366,632 + Dsui_2224 0.76 -1.2 2,366,632 + Dsui_2224 0.76 +0.1 2,366,640 - +2.1 2,366,691 - +2.6 2,366,741 + +0.5 2,366,777 + -0.8 2,366,854 - +0.1 2,366,894 - +0.5 2,367,117 + -2.5 2,367,127 + +0.7 2,367,138 + +1.1 2,367,343 + +0.7 2,367,491 + Dsui_2226 0.22 -0.3 2,367,492 + Dsui_2226 0.22 -1.0 2,367,510 - +0.5 2,367,519 + Dsui_2226 0.25 -0.3 2,367,524 + Dsui_2226 0.26 -0.5 2,367,527 - Dsui_2226 0.26 -0.2 2,367,527 - Dsui_2226 0.26 -1.6 2,367,533 - +1.1 2,367,629 + Dsui_2226 0.38 +0.1 2,367,728 - +1.1 2,367,748 + +2.1 2,367,839 - +1.1 2,367,840 - +2.1 2,367,872 - +0.5 2,368,092 - +1.1 2,368,123 + -0.4 2,368,225 + -0.8 2,368,225 + -1.4 2,368,284 - +2.1 2,368,424 - Dsui_2227 0.40 +0.1 2,368,508 + +0.5 2,368,544 + +0.5 2,368,550 + +1.1 2,368,563 + Dsui_2227 0.67 -0.4 2,368,797 - +0.5 2,368,797 - -0.5 2,368,849 + +0.5 2,368,894 + +2.1 2,368,894 + -0.3 2,368,894 + +1.5 2,368,902 - +2.1 2,368,902 - -0.4 2,368,975 - Dsui_2228 0.16 +0.8 2,368,992 - +0.7 2,369,084 - +1.3 2,369,142 - +2.1 2,369,142 - +0.7
Or see this region's nucleotide sequence