Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2189 and Dsui_2190 are separated by 316 nucleotides Dsui_2190 and Dsui_2191 are separated by 10 nucleotides Dsui_2191 and Dsui_2192 overlap by 16 nucleotides Dsui_2192 and Dsui_2193 are separated by 10 nucleotides
Dsui_2189: Dsui_2189 - acyl-CoA synthetase (NDP forming), at 2,323,771 to 2,326,461
_2189
Dsui_2190: Dsui_2190 - Tellurite resistance protein TehB, at 2,326,778 to 2,327,332
_2190
Dsui_2191: Dsui_2191 - squalene-associated FAD-dependent desaturase, at 2,327,343 to 2,328,680
_2191
Dsui_2192: Dsui_2192 - squalene synthase HpnD, at 2,328,665 to 2,329,498
_2192
Dsui_2193: Dsui_2193 - squalene synthase HpnC, at 2,329,509 to 2,330,333
_2193
Position (kb)
2327
2328
2329 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2326.456 kb on + strand at 2326.584 kb on + strand at 2326.773 kb on - strand at 2326.842 kb on - strand at 2326.842 kb on - strand at 2327.039 kb on - strand at 2327.071 kb on + strand at 2327.088 kb on + strand, within Dsui_2190 at 2327.111 kb on + strand, within Dsui_2190 at 2327.135 kb on - strand at 2327.294 kb on + strand at 2327.334 kb on - strand at 2327.334 kb on - strand at 2327.334 kb on - strand at 2327.359 kb on - strand at 2327.583 kb on + strand, within Dsui_2191 at 2327.598 kb on - strand, within Dsui_2191 at 2327.603 kb on - strand at 2327.627 kb on - strand, within Dsui_2191 at 2327.649 kb on + strand, within Dsui_2191 at 2328.155 kb on + strand at 2328.336 kb on - strand, within Dsui_2191 at 2328.487 kb on - strand at 2328.519 kb on - strand, within Dsui_2191 at 2328.519 kb on - strand at 2328.728 kb on - strand at 2328.742 kb on + strand at 2328.772 kb on + strand at 2328.797 kb on - strand, within Dsui_2192 at 2328.797 kb on - strand, within Dsui_2192 at 2328.853 kb on - strand, within Dsui_2192 at 2328.861 kb on + strand at 2329.108 kb on - strand, within Dsui_2192 at 2329.116 kb on - strand, within Dsui_2192 at 2329.123 kb on + strand, within Dsui_2192 at 2329.131 kb on - strand, within Dsui_2192 at 2329.177 kb on + strand at 2329.186 kb on - strand, within Dsui_2192 at 2329.248 kb on + strand, within Dsui_2192 at 2329.255 kb on - strand, within Dsui_2192 at 2329.276 kb on - strand, within Dsui_2192 at 2329.292 kb on - strand, within Dsui_2192 at 2329.406 kb on - strand, within Dsui_2192 at 2329.600 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 2,326,456 + -0.3 2,326,584 + +1.1 2,326,773 - +2.1 2,326,842 - +1.1 2,326,842 - +1.7 2,327,039 - +1.1 2,327,071 + +2.6 2,327,088 + Dsui_2190 0.56 -0.5 2,327,111 + Dsui_2190 0.60 +1.6 2,327,135 - +0.1 2,327,294 + +0.3 2,327,334 - +2.1 2,327,334 - -0.9 2,327,334 - -1.0 2,327,359 - +3.6 2,327,583 + Dsui_2191 0.18 +0.5 2,327,598 - Dsui_2191 0.19 -0.7 2,327,603 - -0.7 2,327,627 - Dsui_2191 0.21 -0.9 2,327,649 + Dsui_2191 0.23 -0.7 2,328,155 + +2.1 2,328,336 - Dsui_2191 0.74 -0.1 2,328,487 - +2.6 2,328,519 - Dsui_2191 0.88 -1.0 2,328,519 - +1.1 2,328,728 - -0.5 2,328,742 + -0.4 2,328,772 + +1.1 2,328,797 - Dsui_2192 0.16 +0.1 2,328,797 - Dsui_2192 0.16 -0.5 2,328,853 - Dsui_2192 0.23 -0.3 2,328,861 + +0.5 2,329,108 - Dsui_2192 0.53 +0.5 2,329,116 - Dsui_2192 0.54 -0.4 2,329,123 + Dsui_2192 0.55 +0.1 2,329,131 - Dsui_2192 0.56 -1.3 2,329,177 + +0.1 2,329,186 - Dsui_2192 0.62 -0.6 2,329,248 + Dsui_2192 0.70 -0.6 2,329,255 - Dsui_2192 0.71 +2.1 2,329,276 - Dsui_2192 0.73 +0.4 2,329,292 - Dsui_2192 0.75 +0.6 2,329,406 - Dsui_2192 0.89 -0.4 2,329,600 + +0.1
Or see this region's nucleotide sequence