Strain Fitness in Dechlorosoma suillum PS around Dsui_1581

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1580 and Dsui_1581 are separated by 4 nucleotidesDsui_1581 and Dsui_1582 are separated by 186 nucleotidesDsui_1582 and Dsui_1583 are separated by 65 nucleotides Dsui_1580: Dsui_1580 - PAS domain S-box, at 1,656,544 to 1,659,249 _1580 Dsui_1581: Dsui_1581 - response regulator, at 1,659,254 to 1,659,904 _1581 Dsui_1582: Dsui_1582 - Fe-S oxidoreductase, at 1,660,091 to 1,660,819 _1582 Dsui_1583: Dsui_1583 - (4Fe-4S) cluster-containing protein, at 1,660,885 to 1,662,297 _1583 Position (kb) 1659 1660Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1658.290 kb on + strand, within Dsui_1580at 1658.308 kb on - strand, within Dsui_1580at 1658.496 kb on + strand, within Dsui_1580at 1658.648 kb on - strand, within Dsui_1580at 1658.827 kb on + strand, within Dsui_1580at 1658.874 kb on - strand, within Dsui_1580at 1658.927 kb on - strand, within Dsui_1580at 1659.009 kb on + strandat 1659.043 kb on - strandat 1659.072 kb on + strandat 1659.080 kb on - strandat 1659.113 kb on - strandat 1659.229 kb on + strandat 1659.263 kb on + strandat 1659.268 kb on - strandat 1659.291 kb on + strandat 1659.401 kb on - strandat 1659.590 kb on - strand, within Dsui_1581at 1659.602 kb on + strand, within Dsui_1581at 1659.610 kb on - strandat 1659.804 kb on + strand, within Dsui_1581at 1659.873 kb on - strandat 1659.907 kb on + strandat 1659.907 kb on - strandat 1660.143 kb on - strandat 1660.261 kb on - strand, within Dsui_1582at 1660.261 kb on - strand, within Dsui_1582at 1660.300 kb on - strand, within Dsui_1582at 1660.312 kb on + strand, within Dsui_1582at 1660.339 kb on - strand, within Dsui_1582at 1660.358 kb on - strand, within Dsui_1582at 1660.371 kb on + strand, within Dsui_1582at 1660.379 kb on - strand, within Dsui_1582at 1660.421 kb on - strand, within Dsui_1582at 1660.421 kb on - strand, within Dsui_1582at 1660.428 kb on + strand, within Dsui_1582at 1660.450 kb on + strand, within Dsui_1582at 1660.511 kb on - strand, within Dsui_1582at 1660.592 kb on + strand, within Dsui_1582at 1660.615 kb on - strand, within Dsui_1582at 1660.650 kb on - strand, within Dsui_1582at 1660.791 kb on - strandat 1660.835 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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1,658,290 + Dsui_1580 0.65 -0.1
1,658,308 - Dsui_1580 0.65 -1.2
1,658,496 + Dsui_1580 0.72 -0.0
1,658,648 - Dsui_1580 0.78 -2.1
1,658,827 + Dsui_1580 0.84 -0.6
1,658,874 - Dsui_1580 0.86 +1.8
1,658,927 - Dsui_1580 0.88 +0.1
1,659,009 + -0.1
1,659,043 - -0.1
1,659,072 + -0.5
1,659,080 - -0.4
1,659,113 - -1.1
1,659,229 + -0.7
1,659,263 + -0.7
1,659,268 - -2.7
1,659,291 + -0.7
1,659,401 - +0.3
1,659,590 - Dsui_1581 0.52 -3.7
1,659,602 + Dsui_1581 0.53 -3.4
1,659,610 - +0.9
1,659,804 + Dsui_1581 0.84 -2.3
1,659,873 - -0.2
1,659,907 + +0.9
1,659,907 - +0.3
1,660,143 - -1.4
1,660,261 - Dsui_1582 0.23 -1.5
1,660,261 - Dsui_1582 0.23 -2.0
1,660,300 - Dsui_1582 0.29 +0.3
1,660,312 + Dsui_1582 0.30 -0.9
1,660,339 - Dsui_1582 0.34 -1.1
1,660,358 - Dsui_1582 0.37 -1.4
1,660,371 + Dsui_1582 0.38 -0.6
1,660,379 - Dsui_1582 0.40 -0.1
1,660,421 - Dsui_1582 0.45 -0.3
1,660,421 - Dsui_1582 0.45 -1.2
1,660,428 + Dsui_1582 0.46 -0.7
1,660,450 + Dsui_1582 0.49 -2.7
1,660,511 - Dsui_1582 0.58 -0.8
1,660,592 + Dsui_1582 0.69 -1.0
1,660,615 - Dsui_1582 0.72 -1.5
1,660,650 - Dsui_1582 0.77 -0.6
1,660,791 - -0.4
1,660,835 + -0.0

Or see this region's nucleotide sequence