Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1457 and Dsui_1458 are separated by 101 nucleotides Dsui_1458 and Dsui_1459 are separated by 1 nucleotides Dsui_1459 and Dsui_1460 are separated by 140 nucleotides
Dsui_1457: Dsui_1457 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,516,863 to 1,517,258
_1457
Dsui_1458: Dsui_1458 - phosphohistidine phosphatase SixA, at 1,517,360 to 1,517,851
_1458
Dsui_1459: Dsui_1459 - hypothetical protein, at 1,517,853 to 1,519,376
_1459
Dsui_1460: Dsui_1460 - cAMP-binding protein, at 1,519,517 to 1,520,209
_1460
Position (kb)
1517
1518
1519
1520 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1516.882 kb on + strand at 1516.887 kb on + strand at 1517.071 kb on + strand, within Dsui_1457 at 1517.164 kb on - strand at 1517.318 kb on + strand at 1517.386 kb on + strand at 1517.407 kb on + strand at 1517.424 kb on + strand, within Dsui_1458 at 1517.467 kb on - strand, within Dsui_1458 at 1517.490 kb on + strand, within Dsui_1458 at 1517.574 kb on + strand, within Dsui_1458 at 1517.584 kb on + strand, within Dsui_1458 at 1517.585 kb on + strand, within Dsui_1458 at 1517.635 kb on + strand, within Dsui_1458 at 1517.668 kb on + strand, within Dsui_1458 at 1517.676 kb on - strand, within Dsui_1458 at 1517.691 kb on - strand, within Dsui_1458 at 1517.704 kb on + strand, within Dsui_1458 at 1517.928 kb on - strand at 1517.991 kb on - strand at 1518.337 kb on - strand, within Dsui_1459 at 1518.457 kb on - strand, within Dsui_1459 at 1518.560 kb on - strand, within Dsui_1459 at 1518.651 kb on + strand, within Dsui_1459 at 1518.689 kb on - strand, within Dsui_1459 at 1518.769 kb on + strand, within Dsui_1459 at 1518.777 kb on - strand, within Dsui_1459 at 1518.833 kb on + strand, within Dsui_1459 at 1518.953 kb on + strand, within Dsui_1459 at 1518.954 kb on + strand at 1519.019 kb on - strand, within Dsui_1459 at 1519.119 kb on - strand, within Dsui_1459 at 1519.219 kb on + strand, within Dsui_1459 at 1519.227 kb on - strand at 1519.238 kb on + strand at 1519.244 kb on + strand at 1519.375 kb on + strand at 1519.515 kb on + strand at 1519.530 kb on - strand at 1519.636 kb on + strand, within Dsui_1460 at 1519.679 kb on - strand, within Dsui_1460 at 1519.764 kb on + strand at 1519.770 kb on - strand, within Dsui_1460 at 1519.770 kb on - strand, within Dsui_1460 at 1519.800 kb on - strand, within Dsui_1460 at 1519.869 kb on + strand, within Dsui_1460 at 1519.888 kb on - strand, within Dsui_1460 at 1519.903 kb on + strand, within Dsui_1460 at 1519.907 kb on - strand, within Dsui_1460 at 1519.920 kb on + strand, within Dsui_1460 at 1519.926 kb on + strand at 1519.928 kb on - strand, within Dsui_1460 at 1519.940 kb on + strand at 1519.948 kb on - strand, within Dsui_1460 at 1519.948 kb on - strand, within Dsui_1460 at 1519.959 kb on + strand, within Dsui_1460 at 1519.963 kb on + strand at 1519.966 kb on - strand, within Dsui_1460 at 1519.966 kb on - strand, within Dsui_1460 at 1519.966 kb on - strand, within Dsui_1460 at 1519.967 kb on - strand, within Dsui_1460 at 1519.997 kb on + strand, within Dsui_1460 at 1520.005 kb on - strand, within Dsui_1460 at 1520.027 kb on - strand, within Dsui_1460 at 1520.044 kb on + strand, within Dsui_1460 at 1520.252 kb on + strand at 1520.258 kb on - strand at 1520.258 kb on - strand at 1520.273 kb on + strand at 1520.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,516,882 + +0.9 1,516,887 + +0.1 1,517,071 + Dsui_1457 0.53 +0.0 1,517,164 - +0.9 1,517,318 + -0.1 1,517,386 + +0.2 1,517,407 + -0.3 1,517,424 + Dsui_1458 0.13 +1.4 1,517,467 - Dsui_1458 0.22 -0.1 1,517,490 + Dsui_1458 0.26 +1.2 1,517,574 + Dsui_1458 0.43 -0.9 1,517,584 + Dsui_1458 0.46 -0.4 1,517,585 + Dsui_1458 0.46 +1.0 1,517,635 + Dsui_1458 0.56 +0.1 1,517,668 + Dsui_1458 0.63 -0.1 1,517,676 - Dsui_1458 0.64 -1.5 1,517,691 - Dsui_1458 0.67 -0.2 1,517,704 + Dsui_1458 0.70 -0.4 1,517,928 - +0.6 1,517,991 - -1.1 1,518,337 - Dsui_1459 0.32 -0.1 1,518,457 - Dsui_1459 0.40 -0.3 1,518,560 - Dsui_1459 0.46 +0.1 1,518,651 + Dsui_1459 0.52 +0.4 1,518,689 - Dsui_1459 0.55 +0.2 1,518,769 + Dsui_1459 0.60 +1.3 1,518,777 - Dsui_1459 0.61 -0.3 1,518,833 + Dsui_1459 0.64 -1.4 1,518,953 + Dsui_1459 0.72 +0.8 1,518,954 + -0.6 1,519,019 - Dsui_1459 0.77 -0.5 1,519,119 - Dsui_1459 0.83 -0.6 1,519,219 + Dsui_1459 0.90 -0.4 1,519,227 - +0.3 1,519,238 + +0.2 1,519,244 + +0.8 1,519,375 + -0.2 1,519,515 + -0.8 1,519,530 - +0.6 1,519,636 + Dsui_1460 0.17 -4.2 1,519,679 - Dsui_1460 0.23 +0.4 1,519,764 + -0.1 1,519,770 - Dsui_1460 0.37 -3.1 1,519,770 - Dsui_1460 0.37 -3.5 1,519,800 - Dsui_1460 0.41 -5.1 1,519,869 + Dsui_1460 0.51 -1.4 1,519,888 - Dsui_1460 0.54 -4.5 1,519,903 + Dsui_1460 0.56 -3.5 1,519,907 - Dsui_1460 0.56 -3.0 1,519,920 + Dsui_1460 0.58 -3.4 1,519,926 + -1.1 1,519,928 - Dsui_1460 0.59 -3.6 1,519,940 + -0.1 1,519,948 - Dsui_1460 0.62 -0.4 1,519,948 - Dsui_1460 0.62 -3.1 1,519,959 + Dsui_1460 0.64 -0.9 1,519,963 + -0.4 1,519,966 - Dsui_1460 0.65 -3.5 1,519,966 - Dsui_1460 0.65 -3.0 1,519,966 - Dsui_1460 0.65 -0.4 1,519,967 - Dsui_1460 0.65 -3.4 1,519,997 + Dsui_1460 0.69 -3.6 1,520,005 - Dsui_1460 0.70 -3.7 1,520,027 - Dsui_1460 0.74 -2.3 1,520,044 + Dsui_1460 0.76 -1.4 1,520,252 + +0.4 1,520,258 - -1.5 1,520,258 - +1.9 1,520,273 + +0.4 1,520,363 - -1.2
Or see this region's nucleotide sequence