Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1011 and Dsui_1012 are separated by 135 nucleotides Dsui_1012 and Dsui_1013 are separated by 18 nucleotides Dsui_1013 and Dsui_1014 are separated by 69 nucleotides
Dsui_1011: Dsui_1011 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,041,420 to 1,044,800
_1011
Dsui_1012: Dsui_1012 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,044,936 to 1,046,174
_1012
Dsui_1013: Dsui_1013 - thiamine biosynthesis protein ThiS, at 1,046,193 to 1,046,402
_1013
Dsui_1014: Dsui_1014 - putative enzyme of thiazole biosynthesis, at 1,046,472 to 1,047,257
_1014
Position (kb)
1044
1045
1046
1047 Strain fitness (log2 ratio)
-1
0
1
2 at 1043.967 kb on - strand, within Dsui_1011 at 1043.967 kb on - strand, within Dsui_1011 at 1043.992 kb on - strand, within Dsui_1011 at 1044.106 kb on + strand, within Dsui_1011 at 1044.226 kb on - strand, within Dsui_1011 at 1044.374 kb on + strand, within Dsui_1011 at 1044.534 kb on - strand at 1044.590 kb on + strand at 1044.721 kb on + strand at 1044.739 kb on - strand at 1044.818 kb on - strand at 1044.939 kb on + strand at 1044.939 kb on - strand at 1044.947 kb on - strand at 1044.973 kb on - strand at 1045.061 kb on + strand, within Dsui_1012 at 1045.097 kb on - strand, within Dsui_1012 at 1045.267 kb on - strand, within Dsui_1012 at 1045.689 kb on - strand, within Dsui_1012 at 1045.749 kb on - strand, within Dsui_1012 at 1045.749 kb on - strand, within Dsui_1012 at 1045.825 kb on + strand at 1045.871 kb on - strand, within Dsui_1012 at 1045.877 kb on + strand at 1045.885 kb on - strand, within Dsui_1012 at 1045.902 kb on + strand, within Dsui_1012 at 1045.910 kb on - strand, within Dsui_1012 at 1045.948 kb on + strand at 1045.963 kb on + strand at 1045.963 kb on + strand at 1045.992 kb on + strand at 1046.019 kb on + strand, within Dsui_1012 at 1046.022 kb on - strand, within Dsui_1012 at 1046.032 kb on - strand, within Dsui_1012 at 1046.151 kb on + strand at 1046.152 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,043,967 - Dsui_1011 0.75 +0.4 1,043,967 - Dsui_1011 0.75 -0.1 1,043,992 - Dsui_1011 0.76 +0.8 1,044,106 + Dsui_1011 0.79 +0.8 1,044,226 - Dsui_1011 0.83 -0.4 1,044,374 + Dsui_1011 0.87 -0.1 1,044,534 - -0.4 1,044,590 + +0.2 1,044,721 + -1.0 1,044,739 - +0.1 1,044,818 - +0.6 1,044,939 + -0.2 1,044,939 - -0.3 1,044,947 - -0.2 1,044,973 - -1.3 1,045,061 + Dsui_1012 0.10 +2.0 1,045,097 - Dsui_1012 0.13 +0.4 1,045,267 - Dsui_1012 0.27 -0.3 1,045,689 - Dsui_1012 0.61 -0.2 1,045,749 - Dsui_1012 0.66 +0.8 1,045,749 - Dsui_1012 0.66 +0.1 1,045,825 + +2.4 1,045,871 - Dsui_1012 0.75 -0.8 1,045,877 + +1.0 1,045,885 - Dsui_1012 0.77 -0.8 1,045,902 + Dsui_1012 0.78 +0.5 1,045,910 - Dsui_1012 0.79 -0.0 1,045,948 + -0.3 1,045,963 + +1.0 1,045,963 + -0.3 1,045,992 + -0.3 1,046,019 + Dsui_1012 0.87 -0.8 1,046,022 - Dsui_1012 0.88 +0.3 1,046,032 - Dsui_1012 0.88 +1.1 1,046,151 + +2.0 1,046,152 + +0.3
Or see this region's nucleotide sequence