Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0858 and Dsui_0859 are separated by 83 nucleotides Dsui_0859 and Dsui_0860 are separated by 5 nucleotides Dsui_0860 and Dsui_0861 are separated by 33 nucleotides Dsui_0861 and Dsui_0862 are separated by 40 nucleotides
Dsui_0858: Dsui_0858 - ATP synthase, F1 epsilon subunit, at 874,182 to 874,604
_0858
Dsui_0859: Dsui_0859 - hypothetical protein, at 874,688 to 875,263
_0859
Dsui_0860: Dsui_0860 - hypothetical protein, at 875,269 to 876,180
_0860
Dsui_0861: Dsui_0861 - ubiquinone/menaquinone biosynthesis methyltransferase, at 876,214 to 876,948
_0861
Dsui_0862: Dsui_0862 - hypothetical protein, at 876,989 to 877,414
_0862
Position (kb) 875
876
877 Strain fitness (log2 ratio) -2
-1
0
1
2 at 874.853 kb on - strand, within Dsui_0859 at 874.923 kb on + strand at 875.033 kb on - strand, within Dsui_0859 at 875.267 kb on + strand at 875.321 kb on + strand at 875.375 kb on + strand, within Dsui_0860 at 875.447 kb on + strand, within Dsui_0860 at 875.563 kb on - strand, within Dsui_0860 at 875.591 kb on + strand at 875.599 kb on - strand, within Dsui_0860 at 875.652 kb on - strand, within Dsui_0860 at 875.866 kb on - strand, within Dsui_0860 at 876.133 kb on + strand at 876.154 kb on + strand at 876.164 kb on + strand at 876.164 kb on + strand at 876.995 kb on - strand at 876.995 kb on - strand at 876.995 kb on - strand at 877.090 kb on + strand, within Dsui_0862 at 877.120 kb on + strand at 877.164 kb on + strand, within Dsui_0862
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 874,853 - Dsui_0859 0.29 -1.2 874,923 + -0.1 875,033 - Dsui_0859 0.60 +0.5 875,267 + -0.4 875,321 + +0.6 875,375 + Dsui_0860 0.12 +1.9 875,447 + Dsui_0860 0.20 +1.5 875,563 - Dsui_0860 0.32 -0.4 875,591 + -0.4 875,599 - Dsui_0860 0.36 -0.7 875,652 - Dsui_0860 0.42 +0.3 875,866 - Dsui_0860 0.65 -0.4 876,133 + +0.4 876,154 + -0.1 876,164 + -0.9 876,164 + +0.0 876,995 - -0.1 876,995 - -0.9 876,995 - +0.4 877,090 + Dsui_0862 0.24 -2.2 877,120 + +1.9 877,164 + Dsui_0862 0.41 -2.0
Or see this region's nucleotide sequence