Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0323 and Dsui_0324 are separated by 9 nucleotides Dsui_0324 and Dsui_0325 are separated by 7 nucleotides
Dsui_0323: Dsui_0323 - 3-hydroxyacyl-CoA dehydrogenase, at 326,872 to 328,809
_0323
Dsui_0324: Dsui_0324 - EDD domain protein, DegV family, at 328,819 to 329,763
_0324
Dsui_0325: Dsui_0325 - acetyl-CoA acetyltransferase, at 329,771 to 331,069
_0325
Position (kb) 328
329
330 Strain fitness (log2 ratio) -1
0
1
2
3 at 327.987 kb on - strand, within Dsui_0323 at 328.171 kb on - strand, within Dsui_0323 at 328.370 kb on + strand, within Dsui_0323 at 328.388 kb on - strand, within Dsui_0323 at 328.719 kb on - strand at 329.020 kb on - strand, within Dsui_0324 at 329.024 kb on - strand, within Dsui_0324 at 329.070 kb on - strand, within Dsui_0324 at 329.081 kb on - strand, within Dsui_0324 at 329.157 kb on + strand, within Dsui_0324 at 329.157 kb on + strand, within Dsui_0324 at 329.165 kb on - strand, within Dsui_0324 at 329.213 kb on + strand, within Dsui_0324 at 329.279 kb on - strand, within Dsui_0324 at 329.346 kb on - strand, within Dsui_0324 at 329.348 kb on + strand, within Dsui_0324 at 329.387 kb on - strand, within Dsui_0324 at 329.553 kb on + strand at 329.553 kb on + strand, within Dsui_0324 at 329.598 kb on + strand, within Dsui_0324 at 329.607 kb on - strand, within Dsui_0324 at 329.912 kb on - strand, within Dsui_0325 at 329.917 kb on - strand, within Dsui_0325 at 329.950 kb on + strand, within Dsui_0325 at 329.986 kb on - strand, within Dsui_0325 at 329.991 kb on - strand, within Dsui_0325 at 330.015 kb on + strand, within Dsui_0325 at 330.040 kb on - strand, within Dsui_0325 at 330.050 kb on - strand, within Dsui_0325 at 330.075 kb on - strand, within Dsui_0325 at 330.085 kb on - strand, within Dsui_0325 at 330.090 kb on - strand, within Dsui_0325 at 330.090 kb on - strand, within Dsui_0325 at 330.148 kb on + strand, within Dsui_0325 at 330.307 kb on + strand, within Dsui_0325 at 330.314 kb on - strand, within Dsui_0325 at 330.371 kb on - strand, within Dsui_0325 at 330.429 kb on + strand, within Dsui_0325 at 330.437 kb on - strand, within Dsui_0325 at 330.437 kb on - strand, within Dsui_0325 at 330.512 kb on + strand, within Dsui_0325 at 330.535 kb on + strand, within Dsui_0325 at 330.546 kb on + strand, within Dsui_0325 at 330.546 kb on + strand, within Dsui_0325 at 330.581 kb on - strand, within Dsui_0325 at 330.616 kb on - strand, within Dsui_0325 at 330.664 kb on - strand, within Dsui_0325 at 330.664 kb on - strand, within Dsui_0325 at 330.695 kb on + strand, within Dsui_0325 at 330.735 kb on - strand, within Dsui_0325 at 330.759 kb on + strand, within Dsui_0325 at 330.760 kb on - strand, within Dsui_0325
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 327,987 - Dsui_0323 0.58 -0.5 328,171 - Dsui_0323 0.67 +0.3 328,370 + Dsui_0323 0.77 +0.9 328,388 - Dsui_0323 0.78 -0.4 328,719 - +1.0 329,020 - Dsui_0324 0.21 +1.2 329,024 - Dsui_0324 0.22 +1.2 329,070 - Dsui_0324 0.27 +1.3 329,081 - Dsui_0324 0.28 +0.6 329,157 + Dsui_0324 0.36 -0.4 329,157 + Dsui_0324 0.36 +0.1 329,165 - Dsui_0324 0.37 +0.3 329,213 + Dsui_0324 0.42 -0.6 329,279 - Dsui_0324 0.49 +0.3 329,346 - Dsui_0324 0.56 +0.0 329,348 + Dsui_0324 0.56 -0.0 329,387 - Dsui_0324 0.60 +0.1 329,553 + +3.3 329,553 + Dsui_0324 0.78 +0.4 329,598 + Dsui_0324 0.82 +0.6 329,607 - Dsui_0324 0.83 +1.3 329,912 - Dsui_0325 0.11 -0.2 329,917 - Dsui_0325 0.11 +0.4 329,950 + Dsui_0325 0.14 +0.5 329,986 - Dsui_0325 0.17 -0.0 329,991 - Dsui_0325 0.17 -0.4 330,015 + Dsui_0325 0.19 -0.5 330,040 - Dsui_0325 0.21 +0.3 330,050 - Dsui_0325 0.21 +0.4 330,075 - Dsui_0325 0.23 -0.4 330,085 - Dsui_0325 0.24 +0.4 330,090 - Dsui_0325 0.25 +0.1 330,090 - Dsui_0325 0.25 +0.6 330,148 + Dsui_0325 0.29 -0.5 330,307 + Dsui_0325 0.41 -0.2 330,314 - Dsui_0325 0.42 +0.1 330,371 - Dsui_0325 0.46 -0.2 330,429 + Dsui_0325 0.51 +0.1 330,437 - Dsui_0325 0.51 -0.0 330,437 - Dsui_0325 0.51 -0.0 330,512 + Dsui_0325 0.57 -0.5 330,535 + Dsui_0325 0.59 +0.5 330,546 + Dsui_0325 0.60 +0.3 330,546 + Dsui_0325 0.60 -1.3 330,581 - Dsui_0325 0.62 -0.7 330,616 - Dsui_0325 0.65 +0.0 330,664 - Dsui_0325 0.69 +0.6 330,664 - Dsui_0325 0.69 +0.0 330,695 + Dsui_0325 0.71 -0.6 330,735 - Dsui_0325 0.74 +0.0 330,759 + Dsui_0325 0.76 +0.3 330,760 - Dsui_0325 0.76 +0.3
Or see this region's nucleotide sequence