Strain Fitness in Dechlorosoma suillum PS around Dsui_0103

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0101 and Dsui_0102 are separated by 45 nucleotidesDsui_0102 and Dsui_0103 are separated by 359 nucleotidesDsui_0103 and Dsui_0104 are separated by 107 nucleotidesDsui_0104 and Dsui_0105 are separated by 64 nucleotides Dsui_0101: Dsui_0101 - exonuclease, DNA polymerase III, epsilon subunit family, at 99,453 to 100,919 _0101 Dsui_0102: Dsui_0102 - transcription elongation factor, at 100,965 to 101,414 _0102 Dsui_0103: Dsui_0103 - transcriptional regulator, at 101,774 to 102,364 _0103 Dsui_0104: Dsui_0104 - CBS-domain-containing membrane protein, at 102,472 to 102,966 _0104 Dsui_0105: Dsui_0105 - NAD-dependent aldehyde dehydrogenase, at 103,031 to 104,461 _0105 Position (kb) 101 102 103Strain fitness (log2 ratio) -1 0 1 2at 100.779 kb on + strandat 100.787 kb on - strandat 100.787 kb on - strandat 100.835 kb on + strandat 100.838 kb on + strandat 100.840 kb on + strandat 101.100 kb on + strand, within Dsui_0102at 101.108 kb on - strand, within Dsui_0102at 101.143 kb on + strand, within Dsui_0102at 101.187 kb on + strand, within Dsui_0102at 101.187 kb on + strand, within Dsui_0102at 101.190 kb on + strand, within Dsui_0102at 101.351 kb on - strand, within Dsui_0102at 101.354 kb on + strand, within Dsui_0102at 101.364 kb on + strandat 101.406 kb on - strandat 101.409 kb on + strandat 101.422 kb on + strandat 101.430 kb on - strandat 101.724 kb on - strandat 101.806 kb on + strandat 101.878 kb on - strand, within Dsui_0103at 101.931 kb on - strand, within Dsui_0103at 101.972 kb on + strand, within Dsui_0103at 102.071 kb on - strand, within Dsui_0103at 102.076 kb on - strand, within Dsui_0103at 102.157 kb on + strandat 102.168 kb on + strandat 102.176 kb on - strand, within Dsui_0103at 102.186 kb on - strand, within Dsui_0103at 102.223 kb on + strandat 102.352 kb on - strandat 102.368 kb on - strandat 102.495 kb on + strandat 102.511 kb on + strandat 102.511 kb on + strandat 102.511 kb on + strandat 102.519 kb on - strandat 102.519 kb on - strandat 102.542 kb on + strandat 102.585 kb on - strandat 102.696 kb on + strand, within Dsui_0104at 102.728 kb on + strand, within Dsui_0104at 102.748 kb on + strandat 102.842 kb on - strand, within Dsui_0104at 102.965 kb on - strandat 102.967 kb on - strandat 102.975 kb on - strandat 103.104 kb on - strandat 103.125 kb on - strandat 103.156 kb on - strandat 103.158 kb on + strandat 103.246 kb on - strand, within Dsui_0105at 103.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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100,779 + -0.5
100,787 - -0.2
100,787 - +0.3
100,835 + -0.2
100,838 + -0.8
100,840 + -0.2
101,100 + Dsui_0102 0.30 -1.3
101,108 - Dsui_0102 0.32 +0.0
101,143 + Dsui_0102 0.40 -0.5
101,187 + Dsui_0102 0.49 +0.6
101,187 + Dsui_0102 0.49 +0.6
101,190 + Dsui_0102 0.50 +0.6
101,351 - Dsui_0102 0.86 -0.2
101,354 + Dsui_0102 0.86 +0.5
101,364 + +0.5
101,406 - +0.2
101,409 + +0.5
101,422 + -0.5
101,430 - +0.6
101,724 - -1.0
101,806 + +0.5
101,878 - Dsui_0103 0.18 -0.3
101,931 - Dsui_0103 0.27 -1.3
101,972 + Dsui_0103 0.34 -0.2
102,071 - Dsui_0103 0.50 -0.1
102,076 - Dsui_0103 0.51 -0.5
102,157 + -0.3
102,168 + +0.5
102,176 - Dsui_0103 0.68 -0.7
102,186 - Dsui_0103 0.70 -1.2
102,223 + +0.3
102,352 - +0.4
102,368 - +2.1
102,495 + +0.7
102,511 + +1.1
102,511 + -0.3
102,511 + -1.5
102,519 - +0.7
102,519 - -1.5
102,542 + +2.1
102,585 - -0.3
102,696 + Dsui_0104 0.45 +0.1
102,728 + Dsui_0104 0.52 +1.6
102,748 + +1.5
102,842 - Dsui_0104 0.75 +0.5
102,965 - +0.0
102,967 - -0.4
102,975 - -0.5
103,104 - +1.1
103,125 - -0.3
103,156 - +0.6
103,158 + +0.1
103,246 - Dsui_0105 0.15 -0.3
103,324 - +2.1

Or see this region's nucleotide sequence