Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08380

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c08360 and PGA1_c08370 are separated by 86 nucleotidesPGA1_c08370 and PGA1_c08380 are separated by 176 nucleotidesPGA1_c08380 and PGA1_c08390 are separated by 97 nucleotides PGA1_c08360: PGA1_c08360 - Rhodanese-related sulfurtransferase, at 866,438 to 866,839 _c08360 PGA1_c08370: PGA1_c08370 - Rhodanese-related sulfurtransferase, at 866,926 to 867,327 _c08370 PGA1_c08380: PGA1_c08380 - protein Tas, at 867,504 to 868,547 _c08380 PGA1_c08390: PGA1_c08390 - putative transcriptional regulator, AraC family, at 868,645 to 869,736 _c08390 Position (kb) 867 868 869Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 866.586 kb on + strand, within PGA1_c08360at 866.586 kb on + strand, within PGA1_c08360at 866.593 kb on - strand, within PGA1_c08360at 866.594 kb on - strand, within PGA1_c08360at 866.600 kb on + strand, within PGA1_c08360at 866.685 kb on + strand, within PGA1_c08360at 866.735 kb on - strand, within PGA1_c08360at 866.760 kb on - strand, within PGA1_c08360at 866.771 kb on + strand, within PGA1_c08360at 866.795 kb on - strand, within PGA1_c08360at 866.799 kb on + strandat 866.804 kb on - strandat 866.848 kb on + strandat 866.855 kb on + strandat 866.958 kb on - strandat 867.001 kb on + strand, within PGA1_c08370at 867.016 kb on - strand, within PGA1_c08370at 867.104 kb on - strand, within PGA1_c08370at 867.107 kb on + strand, within PGA1_c08370at 867.115 kb on - strand, within PGA1_c08370at 867.130 kb on - strand, within PGA1_c08370at 867.132 kb on + strand, within PGA1_c08370at 867.132 kb on + strand, within PGA1_c08370at 867.132 kb on + strand, within PGA1_c08370at 867.132 kb on + strand, within PGA1_c08370at 867.151 kb on + strand, within PGA1_c08370at 867.159 kb on - strand, within PGA1_c08370at 867.178 kb on + strand, within PGA1_c08370at 867.235 kb on - strand, within PGA1_c08370at 867.237 kb on + strand, within PGA1_c08370at 867.274 kb on + strand, within PGA1_c08370at 867.377 kb on - strandat 867.391 kb on - strandat 867.398 kb on - strandat 867.398 kb on - strandat 867.425 kb on + strandat 867.425 kb on + strandat 867.433 kb on - strandat 867.540 kb on - strandat 867.551 kb on - strandat 867.631 kb on - strand, within PGA1_c08380at 867.659 kb on + strand, within PGA1_c08380at 867.659 kb on - strand, within PGA1_c08380at 867.669 kb on + strand, within PGA1_c08380at 867.679 kb on + strand, within PGA1_c08380at 867.698 kb on - strand, within PGA1_c08380at 867.706 kb on - strand, within PGA1_c08380at 867.726 kb on + strand, within PGA1_c08380at 867.747 kb on + strand, within PGA1_c08380at 867.755 kb on - strand, within PGA1_c08380at 867.780 kb on + strand, within PGA1_c08380at 867.789 kb on - strand, within PGA1_c08380at 867.792 kb on + strand, within PGA1_c08380at 867.819 kb on + strand, within PGA1_c08380at 867.824 kb on - strand, within PGA1_c08380at 867.895 kb on + strand, within PGA1_c08380at 867.910 kb on + strand, within PGA1_c08380at 867.910 kb on + strand, within PGA1_c08380at 867.910 kb on + strand, within PGA1_c08380at 867.910 kb on + strand, within PGA1_c08380at 867.910 kb on + strand, within PGA1_c08380at 867.948 kb on + strand, within PGA1_c08380at 867.988 kb on + strand, within PGA1_c08380at 868.011 kb on - strand, within PGA1_c08380at 868.033 kb on + strand, within PGA1_c08380at 868.033 kb on + strand, within PGA1_c08380at 868.033 kb on + strand, within PGA1_c08380at 868.041 kb on - strand, within PGA1_c08380at 868.057 kb on + strand, within PGA1_c08380at 868.164 kb on - strand, within PGA1_c08380at 868.170 kb on + strand, within PGA1_c08380at 868.170 kb on + strand, within PGA1_c08380at 868.171 kb on + strand, within PGA1_c08380at 868.181 kb on + strand, within PGA1_c08380at 868.188 kb on + strand, within PGA1_c08380at 868.224 kb on + strand, within PGA1_c08380at 868.242 kb on + strand, within PGA1_c08380at 868.259 kb on + strand, within PGA1_c08380at 868.259 kb on + strand, within PGA1_c08380at 868.267 kb on - strand, within PGA1_c08380at 868.267 kb on - strand, within PGA1_c08380at 868.267 kb on - strand, within PGA1_c08380at 868.267 kb on - strand, within PGA1_c08380at 868.267 kb on - strand, within PGA1_c08380at 868.279 kb on + strand, within PGA1_c08380at 868.285 kb on + strand, within PGA1_c08380at 868.316 kb on + strand, within PGA1_c08380at 868.316 kb on + strand, within PGA1_c08380at 868.324 kb on - strand, within PGA1_c08380at 868.355 kb on + strand, within PGA1_c08380at 868.383 kb on + strand, within PGA1_c08380at 868.386 kb on - strand, within PGA1_c08380at 868.391 kb on - strand, within PGA1_c08380at 868.401 kb on - strand, within PGA1_c08380at 868.476 kb on + strandat 868.476 kb on + strandat 868.476 kb on + strandat 868.484 kb on - strandat 868.497 kb on + strandat 868.516 kb on - strandat 868.541 kb on + strandat 868.551 kb on + strandat 868.581 kb on - strandat 868.636 kb on + strandat 868.636 kb on + strandat 868.644 kb on - strandat 868.644 kb on - strandat 868.646 kb on + strandat 868.781 kb on - strand, within PGA1_c08390at 868.934 kb on - strand, within PGA1_c08390at 869.060 kb on + strand, within PGA1_c08390at 869.060 kb on + strand, within PGA1_c08390at 869.068 kb on - strand, within PGA1_c08390at 869.068 kb on - strand, within PGA1_c08390at 869.068 kb on - strand, within PGA1_c08390at 869.068 kb on - strand, within PGA1_c08390at 869.088 kb on + strand, within PGA1_c08390at 869.096 kb on - strand, within PGA1_c08390at 869.247 kb on - strand, within PGA1_c08390at 869.259 kb on + strand, within PGA1_c08390at 869.466 kb on + strand, within PGA1_c08390at 869.506 kb on - strand, within PGA1_c08390at 869.532 kb on + strand, within PGA1_c08390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
remove
866,586 + PGA1_c08360 0.37 +2.1
866,586 + PGA1_c08360 0.37 -0.9
866,593 - PGA1_c08360 0.39 +1.5
866,594 - PGA1_c08360 0.39 +0.4
866,600 + PGA1_c08360 0.40 +1.2
866,685 + PGA1_c08360 0.61 +2.4
866,735 - PGA1_c08360 0.74 -0.5
866,760 - PGA1_c08360 0.80 +2.3
866,771 + PGA1_c08360 0.83 -1.9
866,795 - PGA1_c08360 0.89 -1.2
866,799 + +0.3
866,804 - -0.4
866,848 + -1.3
866,855 + -1.0
866,958 - +0.9
867,001 + PGA1_c08370 0.19 +3.7
867,016 - PGA1_c08370 0.22 +0.7
867,104 - PGA1_c08370 0.44 +1.2
867,107 + PGA1_c08370 0.45 +1.2
867,115 - PGA1_c08370 0.47 -1.5
867,130 - PGA1_c08370 0.51 -1.7
867,132 + PGA1_c08370 0.51 +0.4
867,132 + PGA1_c08370 0.51 -0.7
867,132 + PGA1_c08370 0.51 +0.4
867,132 + PGA1_c08370 0.51 +0.1
867,151 + PGA1_c08370 0.56 +0.1
867,159 - PGA1_c08370 0.58 +0.0
867,178 + PGA1_c08370 0.63 +0.7
867,235 - PGA1_c08370 0.77 -1.9
867,237 + PGA1_c08370 0.77 +1.5
867,274 + PGA1_c08370 0.87 -1.5
867,377 - -0.9
867,391 - +0.7
867,398 - -0.6
867,398 - +0.1
867,425 + +0.7
867,425 + -2.5
867,433 - -0.0
867,540 - -0.1
867,551 - +1.9
867,631 - PGA1_c08380 0.12 -0.9
867,659 + PGA1_c08380 0.15 -1.9
867,659 - PGA1_c08380 0.15 -1.0
867,669 + PGA1_c08380 0.16 -0.6
867,679 + PGA1_c08380 0.17 -0.7
867,698 - PGA1_c08380 0.19 +0.8
867,706 - PGA1_c08380 0.19 +0.5
867,726 + PGA1_c08380 0.21 -2.3
867,747 + PGA1_c08380 0.23 +0.7
867,755 - PGA1_c08380 0.24 +0.7
867,780 + PGA1_c08380 0.26 -1.9
867,789 - PGA1_c08380 0.27 +1.7
867,792 + PGA1_c08380 0.28 -0.9
867,819 + PGA1_c08380 0.30 +2.7
867,824 - PGA1_c08380 0.31 +2.5
867,895 + PGA1_c08380 0.37 +0.7
867,910 + PGA1_c08380 0.39 +1.7
867,910 + PGA1_c08380 0.39 +1.1
867,910 + PGA1_c08380 0.39 -0.5
867,910 + PGA1_c08380 0.39 +1.0
867,910 + PGA1_c08380 0.39 -2.1
867,948 + PGA1_c08380 0.43 -0.5
867,988 + PGA1_c08380 0.46 +0.1
868,011 - PGA1_c08380 0.49 -0.0
868,033 + PGA1_c08380 0.51 +0.1
868,033 + PGA1_c08380 0.51 +0.7
868,033 + PGA1_c08380 0.51 -0.3
868,041 - PGA1_c08380 0.51 -0.1
868,057 + PGA1_c08380 0.53 +1.7
868,164 - PGA1_c08380 0.63 -0.5
868,170 + PGA1_c08380 0.64 +1.1
868,170 + PGA1_c08380 0.64 -0.4
868,171 + PGA1_c08380 0.64 +1.1
868,181 + PGA1_c08380 0.65 -2.8
868,188 + PGA1_c08380 0.66 +1.1
868,224 + PGA1_c08380 0.69 +0.5
868,242 + PGA1_c08380 0.71 +1.4
868,259 + PGA1_c08380 0.72 -0.5
868,259 + PGA1_c08380 0.72 +1.7
868,267 - PGA1_c08380 0.73 -0.1
868,267 - PGA1_c08380 0.73 +0.5
868,267 - PGA1_c08380 0.73 -0.1
868,267 - PGA1_c08380 0.73 +0.7
868,267 - PGA1_c08380 0.73 -1.2
868,279 + PGA1_c08380 0.74 -0.6
868,285 + PGA1_c08380 0.75 +0.7
868,316 + PGA1_c08380 0.78 +0.5
868,316 + PGA1_c08380 0.78 +1.0
868,324 - PGA1_c08380 0.79 +0.4
868,355 + PGA1_c08380 0.82 +1.9
868,383 + PGA1_c08380 0.84 -0.8
868,386 - PGA1_c08380 0.84 -0.1
868,391 - PGA1_c08380 0.85 +2.2
868,401 - PGA1_c08380 0.86 +0.4
868,476 + -0.4
868,476 + -0.1
868,476 + -1.7
868,484 - -0.0
868,497 + +0.3
868,516 - +0.3
868,541 + -0.1
868,551 + -0.8
868,581 - +0.3
868,636 + -3.3
868,636 + -3.4
868,644 - -2.1
868,644 - +0.6
868,646 + -2.3
868,781 - PGA1_c08390 0.12 -1.9
868,934 - PGA1_c08390 0.26 -2.3
869,060 + PGA1_c08390 0.38 +0.7
869,060 + PGA1_c08390 0.38 +0.2
869,068 - PGA1_c08390 0.39 -1.8
869,068 - PGA1_c08390 0.39 -1.0
869,068 - PGA1_c08390 0.39 -0.1
869,068 - PGA1_c08390 0.39 -1.9
869,088 + PGA1_c08390 0.41 +0.7
869,096 - PGA1_c08390 0.41 -0.7
869,247 - PGA1_c08390 0.55 -0.4
869,259 + PGA1_c08390 0.56 -0.6
869,466 + PGA1_c08390 0.75 -1.3
869,506 - PGA1_c08390 0.79 -0.7
869,532 + PGA1_c08390 0.81 -1.3

Or see this region's nucleotide sequence