Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07590 and PGA1_c07600 are separated by 62 nucleotides PGA1_c07600 and PGA1_c07610 are separated by 144 nucleotides
PGA1_c07590: PGA1_c07590 - aerotaxis receptor-like protein, at 784,790 to 786,010
_c07590
PGA1_c07600: PGA1_c07600 - transcriptional regulator, AsnC / lrp family, at 786,073 to 786,528
_c07600
PGA1_c07610: PGA1_c07610 - 4-hydroxyphenylpyruvate dioxygenase Hpd, at 786,673 to 787,773
_c07610
Position (kb) 786
787 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 785.118 kb on - strand, within PGA1_c07590 at 785.160 kb on - strand, within PGA1_c07590 at 785.168 kb on - strand, within PGA1_c07590 at 785.408 kb on - strand, within PGA1_c07590 at 785.425 kb on - strand, within PGA1_c07590 at 785.432 kb on - strand, within PGA1_c07590 at 785.452 kb on - strand, within PGA1_c07590 at 785.452 kb on - strand, within PGA1_c07590 at 785.452 kb on - strand, within PGA1_c07590 at 785.488 kb on + strand, within PGA1_c07590 at 785.555 kb on - strand, within PGA1_c07590 at 785.573 kb on + strand, within PGA1_c07590 at 785.580 kb on + strand, within PGA1_c07590 at 785.626 kb on + strand, within PGA1_c07590 at 785.634 kb on - strand, within PGA1_c07590 at 785.658 kb on + strand, within PGA1_c07590 at 785.688 kb on + strand, within PGA1_c07590 at 785.706 kb on + strand, within PGA1_c07590 at 785.714 kb on - strand, within PGA1_c07590 at 785.714 kb on - strand, within PGA1_c07590 at 785.741 kb on + strand, within PGA1_c07590 at 785.757 kb on + strand, within PGA1_c07590 at 785.757 kb on + strand, within PGA1_c07590 at 785.765 kb on - strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.805 kb on + strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.813 kb on - strand, within PGA1_c07590 at 785.870 kb on + strand, within PGA1_c07590 at 785.911 kb on + strand at 786.025 kb on + strand at 786.025 kb on + strand at 786.025 kb on + strand at 786.038 kb on - strand at 786.041 kb on + strand at 786.049 kb on - strand at 786.051 kb on + strand at 786.051 kb on + strand at 786.059 kb on - strand at 786.061 kb on - strand at 786.078 kb on - strand at 786.189 kb on + strand, within PGA1_c07600 at 786.194 kb on + strand, within PGA1_c07600 at 786.197 kb on - strand, within PGA1_c07600 at 786.202 kb on - strand, within PGA1_c07600 at 786.202 kb on - strand, within PGA1_c07600 at 786.202 kb on - strand, within PGA1_c07600 at 786.231 kb on + strand, within PGA1_c07600 at 786.231 kb on + strand, within PGA1_c07600 at 786.235 kb on + strand, within PGA1_c07600 at 786.241 kb on + strand, within PGA1_c07600 at 786.262 kb on + strand, within PGA1_c07600 at 786.270 kb on - strand, within PGA1_c07600 at 786.270 kb on - strand, within PGA1_c07600 at 786.319 kb on + strand, within PGA1_c07600 at 786.324 kb on + strand, within PGA1_c07600 at 786.324 kb on + strand, within PGA1_c07600 at 786.324 kb on + strand, within PGA1_c07600 at 786.327 kb on - strand, within PGA1_c07600 at 786.327 kb on - strand, within PGA1_c07600 at 786.331 kb on + strand, within PGA1_c07600 at 786.332 kb on - strand, within PGA1_c07600 at 786.339 kb on - strand, within PGA1_c07600 at 786.339 kb on - strand, within PGA1_c07600 at 786.359 kb on + strand, within PGA1_c07600 at 786.379 kb on + strand, within PGA1_c07600 at 786.393 kb on - strand, within PGA1_c07600 at 786.434 kb on + strand, within PGA1_c07600 at 786.442 kb on + strand, within PGA1_c07600 at 786.442 kb on + strand, within PGA1_c07600 at 786.442 kb on + strand, within PGA1_c07600 at 786.442 kb on - strand, within PGA1_c07600 at 786.442 kb on - strand, within PGA1_c07600 at 786.450 kb on - strand, within PGA1_c07600 at 786.450 kb on - strand, within PGA1_c07600 at 786.515 kb on + strand at 786.527 kb on - strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.576 kb on + strand at 786.584 kb on - strand at 786.584 kb on - strand at 786.584 kb on - strand at 786.584 kb on - strand at 786.586 kb on + strand at 786.586 kb on + strand at 786.586 kb on + strand at 786.594 kb on - strand at 786.594 kb on - strand at 786.648 kb on - strand at 786.665 kb on - strand at 786.677 kb on + strand at 786.679 kb on - strand at 786.679 kb on - strand at 786.679 kb on - strand at 786.704 kb on - strand at 786.739 kb on - strand at 786.741 kb on + strand at 786.773 kb on + strand at 786.781 kb on - strand at 786.806 kb on + strand, within PGA1_c07610 at 786.809 kb on - strand, within PGA1_c07610 at 787.037 kb on - strand, within PGA1_c07610 at 787.102 kb on - strand, within PGA1_c07610 at 787.127 kb on + strand, within PGA1_c07610 at 787.127 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.136 kb on + strand, within PGA1_c07610 at 787.144 kb on - strand, within PGA1_c07610 at 787.144 kb on - strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.151 kb on + strand, within PGA1_c07610 at 787.165 kb on - strand, within PGA1_c07610 at 787.174 kb on + strand, within PGA1_c07610 at 787.182 kb on - strand, within PGA1_c07610 at 787.182 kb on - strand, within PGA1_c07610 at 787.189 kb on - strand, within PGA1_c07610 at 787.293 kb on + strand, within PGA1_c07610 at 787.296 kb on - strand, within PGA1_c07610 at 787.303 kb on - strand, within PGA1_c07610 at 787.303 kb on - strand, within PGA1_c07610 at 787.313 kb on - strand, within PGA1_c07610 at 787.365 kb on + strand, within PGA1_c07610 at 787.400 kb on + strand, within PGA1_c07610 at 787.496 kb on + strand, within PGA1_c07610 at 787.504 kb on - strand, within PGA1_c07610 at 787.507 kb on - strand, within PGA1_c07610 at 787.510 kb on + strand, within PGA1_c07610 at 787.518 kb on - strand, within PGA1_c07610
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 785,118 - PGA1_c07590 0.27 +0.8 785,160 - PGA1_c07590 0.30 +0.5 785,168 - PGA1_c07590 0.31 +1.0 785,408 - PGA1_c07590 0.51 -0.6 785,425 - PGA1_c07590 0.52 -2.2 785,432 - PGA1_c07590 0.53 +1.7 785,452 - PGA1_c07590 0.54 -1.7 785,452 - PGA1_c07590 0.54 -1.1 785,452 - PGA1_c07590 0.54 -0.9 785,488 + PGA1_c07590 0.57 -0.8 785,555 - PGA1_c07590 0.63 +0.7 785,573 + PGA1_c07590 0.64 -0.3 785,580 + PGA1_c07590 0.65 -1.3 785,626 + PGA1_c07590 0.68 +0.7 785,634 - PGA1_c07590 0.69 -0.9 785,658 + PGA1_c07590 0.71 -0.7 785,688 + PGA1_c07590 0.74 +0.1 785,706 + PGA1_c07590 0.75 +1.6 785,714 - PGA1_c07590 0.76 +0.0 785,714 - PGA1_c07590 0.76 +0.2 785,741 + PGA1_c07590 0.78 -1.2 785,757 + PGA1_c07590 0.79 -3.6 785,757 + PGA1_c07590 0.79 +0.2 785,765 - PGA1_c07590 0.80 +0.7 785,805 + PGA1_c07590 0.83 -0.8 785,805 + PGA1_c07590 0.83 -1.2 785,805 + PGA1_c07590 0.83 -1.8 785,805 + PGA1_c07590 0.83 -1.5 785,813 - PGA1_c07590 0.84 -2.5 785,813 - PGA1_c07590 0.84 -0.7 785,813 - PGA1_c07590 0.84 +0.2 785,813 - PGA1_c07590 0.84 +0.8 785,870 + PGA1_c07590 0.88 +0.9 785,911 + -0.3 786,025 + -0.2 786,025 + +0.9 786,025 + +0.0 786,038 - +0.5 786,041 + -1.3 786,049 - -0.3 786,051 + +0.4 786,051 + -1.2 786,059 - -1.5 786,061 - -1.5 786,078 - +0.3 786,189 + PGA1_c07600 0.25 -0.2 786,194 + PGA1_c07600 0.27 -1.7 786,197 - PGA1_c07600 0.27 -0.7 786,202 - PGA1_c07600 0.28 -2.0 786,202 - PGA1_c07600 0.28 -0.3 786,202 - PGA1_c07600 0.28 -0.8 786,231 + PGA1_c07600 0.35 +0.3 786,231 + PGA1_c07600 0.35 -0.7 786,235 + PGA1_c07600 0.36 +0.4 786,241 + PGA1_c07600 0.37 -0.9 786,262 + PGA1_c07600 0.41 -0.2 786,270 - PGA1_c07600 0.43 +0.5 786,270 - PGA1_c07600 0.43 -0.3 786,319 + PGA1_c07600 0.54 +0.7 786,324 + PGA1_c07600 0.55 -0.3 786,324 + PGA1_c07600 0.55 -1.5 786,324 + PGA1_c07600 0.55 -2.7 786,327 - PGA1_c07600 0.56 -2.2 786,327 - PGA1_c07600 0.56 +0.2 786,331 + PGA1_c07600 0.57 -2.7 786,332 - PGA1_c07600 0.57 -2.2 786,339 - PGA1_c07600 0.58 +0.0 786,339 - PGA1_c07600 0.58 -0.5 786,359 + PGA1_c07600 0.63 -0.9 786,379 + PGA1_c07600 0.67 -0.6 786,393 - PGA1_c07600 0.70 -0.1 786,434 + PGA1_c07600 0.79 -3.3 786,442 + PGA1_c07600 0.81 -0.1 786,442 + PGA1_c07600 0.81 +0.5 786,442 + PGA1_c07600 0.81 +0.2 786,442 - PGA1_c07600 0.81 +0.8 786,442 - PGA1_c07600 0.81 -0.8 786,450 - PGA1_c07600 0.83 +0.2 786,450 - PGA1_c07600 0.83 -0.7 786,515 + -0.5 786,527 - -0.1 786,576 + -1.2 786,576 + -1.2 786,576 + +1.0 786,576 + +1.0 786,576 + +0.2 786,576 + +0.1 786,576 + -0.2 786,576 + +0.3 786,576 + -0.2 786,576 + +0.8 786,576 + -0.3 786,576 + -1.0 786,576 + +0.7 786,584 - +0.4 786,584 - +0.7 786,584 - +0.9 786,584 - -2.5 786,586 + -0.7 786,586 + +0.1 786,586 + -0.8 786,594 - -2.3 786,594 - -0.6 786,648 - -0.7 786,665 - +0.3 786,677 + +1.3 786,679 - -0.9 786,679 - +0.7 786,679 - +0.2 786,704 - +1.8 786,739 - -0.1 786,741 + -1.7 786,773 + -0.0 786,781 - -0.3 786,806 + PGA1_c07610 0.12 -0.6 786,809 - PGA1_c07610 0.12 -0.5 787,037 - PGA1_c07610 0.33 -2.2 787,102 - PGA1_c07610 0.39 +1.0 787,127 + PGA1_c07610 0.41 +1.2 787,127 + PGA1_c07610 0.41 -0.1 787,136 + PGA1_c07610 0.42 -1.4 787,136 + PGA1_c07610 0.42 +0.8 787,136 + PGA1_c07610 0.42 +0.8 787,136 + PGA1_c07610 0.42 -0.2 787,144 - PGA1_c07610 0.43 +0.6 787,144 - PGA1_c07610 0.43 -3.6 787,151 + PGA1_c07610 0.43 +1.1 787,151 + PGA1_c07610 0.43 -0.8 787,151 + PGA1_c07610 0.43 -0.1 787,165 - PGA1_c07610 0.45 +1.0 787,174 + PGA1_c07610 0.46 +1.2 787,182 - PGA1_c07610 0.46 +1.1 787,182 - PGA1_c07610 0.46 -0.8 787,189 - PGA1_c07610 0.47 -0.0 787,293 + PGA1_c07610 0.56 +0.2 787,296 - PGA1_c07610 0.57 -0.8 787,303 - PGA1_c07610 0.57 -0.9 787,303 - PGA1_c07610 0.57 +0.5 787,313 - PGA1_c07610 0.58 +0.3 787,365 + PGA1_c07610 0.63 +0.8 787,400 + PGA1_c07610 0.66 +0.4 787,496 + PGA1_c07610 0.75 -0.4 787,504 - PGA1_c07610 0.75 +0.1 787,507 - PGA1_c07610 0.76 +1.5 787,510 + PGA1_c07610 0.76 -3.4 787,518 - PGA1_c07610 0.77 -0.5
Or see this region's nucleotide sequence