Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06810 and PGA1_c06820 overlap by 4 nucleotides PGA1_c06820 and PGA1_c06830 are separated by 18 nucleotides PGA1_c06830 and PGA1_c06850 are separated by 271 nucleotides
PGA1_c06810: PGA1_c06810 - putative dipeptide transport ATP-binding protein DppD, at 701,052 to 702,032
_c06810
PGA1_c06820: PGA1_c06820 - dipeptide transport ATP-binding protein DppF, at 702,029 to 702,994
_c06820
PGA1_c06830: PGA1_c06830 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 703,013 to 703,909
_c06830
PGA1_c06850: PGA1_c06850 - putative transposase, at 704,181 to 704,891
_c06850
Position (kb) 703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 702.053 kb on + strand at 702.056 kb on - strand at 702.077 kb on + strand at 702.148 kb on - strand, within PGA1_c06820 at 702.160 kb on + strand, within PGA1_c06820 at 702.168 kb on + strand, within PGA1_c06820 at 702.195 kb on + strand, within PGA1_c06820 at 702.203 kb on - strand, within PGA1_c06820 at 702.283 kb on - strand, within PGA1_c06820 at 702.297 kb on + strand, within PGA1_c06820 at 702.403 kb on - strand, within PGA1_c06820 at 702.412 kb on + strand, within PGA1_c06820 at 702.520 kb on + strand, within PGA1_c06820 at 702.541 kb on + strand, within PGA1_c06820 at 702.611 kb on + strand, within PGA1_c06820 at 702.611 kb on + strand, within PGA1_c06820 at 702.612 kb on - strand, within PGA1_c06820 at 702.619 kb on - strand, within PGA1_c06820 at 702.619 kb on - strand, within PGA1_c06820 at 702.650 kb on - strand, within PGA1_c06820 at 702.669 kb on + strand, within PGA1_c06820 at 702.682 kb on - strand, within PGA1_c06820 at 702.713 kb on - strand, within PGA1_c06820 at 702.760 kb on + strand, within PGA1_c06820 at 702.778 kb on - strand, within PGA1_c06820 at 702.780 kb on + strand, within PGA1_c06820 at 702.828 kb on + strand, within PGA1_c06820 at 702.836 kb on - strand, within PGA1_c06820 at 702.840 kb on + strand, within PGA1_c06820 at 702.871 kb on - strand, within PGA1_c06820 at 702.923 kb on - strand at 702.925 kb on + strand at 702.925 kb on + strand at 702.925 kb on + strand at 702.927 kb on + strand at 702.927 kb on + strand at 702.927 kb on + strand at 702.933 kb on - strand at 702.933 kb on - strand at 702.933 kb on - strand at 702.934 kb on + strand at 702.935 kb on - strand at 702.997 kb on - strand at 703.094 kb on + strand at 703.102 kb on + strand at 703.174 kb on + strand, within PGA1_c06830 at 703.185 kb on + strand, within PGA1_c06830 at 703.192 kb on + strand, within PGA1_c06830 at 703.193 kb on - strand, within PGA1_c06830 at 703.262 kb on + strand, within PGA1_c06830 at 703.305 kb on + strand, within PGA1_c06830 at 703.308 kb on + strand, within PGA1_c06830 at 703.313 kb on + strand, within PGA1_c06830 at 703.313 kb on + strand, within PGA1_c06830 at 703.313 kb on + strand, within PGA1_c06830 at 703.313 kb on + strand, within PGA1_c06830 at 703.313 kb on - strand, within PGA1_c06830 at 703.321 kb on - strand, within PGA1_c06830 at 703.321 kb on - strand, within PGA1_c06830 at 703.335 kb on - strand, within PGA1_c06830 at 703.362 kb on + strand, within PGA1_c06830 at 703.411 kb on - strand, within PGA1_c06830 at 703.466 kb on + strand, within PGA1_c06830 at 703.513 kb on + strand, within PGA1_c06830 at 703.540 kb on + strand, within PGA1_c06830 at 703.548 kb on - strand, within PGA1_c06830 at 703.548 kb on - strand, within PGA1_c06830 at 703.568 kb on + strand, within PGA1_c06830 at 703.621 kb on - strand, within PGA1_c06830 at 703.637 kb on + strand, within PGA1_c06830 at 703.756 kb on + strand, within PGA1_c06830 at 703.756 kb on + strand, within PGA1_c06830 at 703.763 kb on + strand, within PGA1_c06830 at 703.781 kb on + strand, within PGA1_c06830 at 703.792 kb on + strand, within PGA1_c06830 at 703.818 kb on - strand, within PGA1_c06830 at 703.891 kb on + strand at 703.891 kb on + strand at 703.892 kb on - strand at 703.899 kb on - strand at 703.908 kb on + strand at 703.953 kb on - strand at 703.962 kb on + strand at 703.970 kb on - strand at 703.985 kb on - strand at 703.992 kb on + strand at 703.992 kb on + strand at 704.000 kb on - strand at 704.000 kb on - strand at 704.024 kb on + strand at 704.032 kb on - strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.080 kb on + strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.088 kb on - strand at 704.093 kb on - strand at 704.115 kb on + strand at 704.131 kb on - strand at 704.165 kb on + strand at 704.165 kb on + strand at 704.171 kb on - strand at 704.171 kb on - strand at 704.173 kb on + strand at 704.188 kb on + strand at 704.188 kb on + strand at 704.209 kb on - strand at 704.247 kb on + strand at 704.247 kb on + strand at 704.255 kb on - strand, within PGA1_c06850 at 704.255 kb on - strand, within PGA1_c06850 at 704.301 kb on + strand, within PGA1_c06850 at 704.309 kb on - strand, within PGA1_c06850 at 704.310 kb on - strand, within PGA1_c06850 at 704.357 kb on + strand, within PGA1_c06850 at 704.360 kb on - strand, within PGA1_c06850 at 704.364 kb on + strand, within PGA1_c06850 at 704.364 kb on + strand, within PGA1_c06850 at 704.364 kb on + strand, within PGA1_c06850 at 704.365 kb on - strand, within PGA1_c06850 at 704.365 kb on - strand, within PGA1_c06850 at 704.404 kb on + strand, within PGA1_c06850 at 704.407 kb on - strand, within PGA1_c06850 at 704.413 kb on - strand, within PGA1_c06850 at 704.413 kb on - strand, within PGA1_c06850 at 704.417 kb on - strand, within PGA1_c06850 at 704.423 kb on - strand, within PGA1_c06850 at 704.423 kb on - strand, within PGA1_c06850 at 704.425 kb on + strand, within PGA1_c06850 at 704.439 kb on + strand, within PGA1_c06850 at 704.454 kb on + strand, within PGA1_c06850 at 704.463 kb on + strand, within PGA1_c06850 at 704.463 kb on + strand, within PGA1_c06850 at 704.495 kb on + strand, within PGA1_c06850 at 704.496 kb on + strand, within PGA1_c06850 at 704.538 kb on - strand, within PGA1_c06850 at 704.549 kb on - strand, within PGA1_c06850 at 704.569 kb on - strand, within PGA1_c06850 at 704.593 kb on + strand, within PGA1_c06850 at 704.593 kb on + strand, within PGA1_c06850 at 704.601 kb on - strand, within PGA1_c06850 at 704.661 kb on + strand, within PGA1_c06850 at 704.781 kb on - strand, within PGA1_c06850 at 704.804 kb on - strand, within PGA1_c06850 at 704.804 kb on - strand, within PGA1_c06850 at 704.809 kb on + strand, within PGA1_c06850 at 704.809 kb on + strand, within PGA1_c06850 at 704.809 kb on + strand, within PGA1_c06850 at 704.843 kb on - strand at 704.850 kb on - strand at 704.862 kb on + strand at 704.862 kb on + strand at 704.870 kb on - strand at 704.870 kb on - strand at 704.870 kb on - strand at 704.889 kb on + strand at 704.890 kb on + strand at 704.897 kb on - strand at 704.898 kb on - strand at 704.898 kb on - strand at 704.900 kb on + strand at 704.900 kb on + strand at 704.900 kb on + strand at 704.900 kb on + strand at 704.900 kb on + strand at 704.900 kb on + strand at 704.900 kb on + strand at 704.908 kb on - strand at 704.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 702,053 + +1.7 702,056 - +0.7 702,077 + -1.2 702,148 - PGA1_c06820 0.12 +0.6 702,160 + PGA1_c06820 0.14 -1.1 702,168 + PGA1_c06820 0.14 -1.3 702,195 + PGA1_c06820 0.17 +0.9 702,203 - PGA1_c06820 0.18 -2.2 702,283 - PGA1_c06820 0.26 +0.9 702,297 + PGA1_c06820 0.28 -0.9 702,403 - PGA1_c06820 0.39 -1.0 702,412 + PGA1_c06820 0.40 -2.0 702,520 + PGA1_c06820 0.51 +1.4 702,541 + PGA1_c06820 0.53 -0.9 702,611 + PGA1_c06820 0.60 +0.0 702,611 + PGA1_c06820 0.60 -0.4 702,612 - PGA1_c06820 0.60 -0.7 702,619 - PGA1_c06820 0.61 +1.3 702,619 - PGA1_c06820 0.61 -1.2 702,650 - PGA1_c06820 0.64 -0.1 702,669 + PGA1_c06820 0.66 +1.4 702,682 - PGA1_c06820 0.68 -1.3 702,713 - PGA1_c06820 0.71 +0.1 702,760 + PGA1_c06820 0.76 +1.1 702,778 - PGA1_c06820 0.78 -2.1 702,780 + PGA1_c06820 0.78 -0.6 702,828 + PGA1_c06820 0.83 +0.1 702,836 - PGA1_c06820 0.84 +0.3 702,840 + PGA1_c06820 0.84 +0.9 702,871 - PGA1_c06820 0.87 -1.0 702,923 - -1.1 702,925 + +0.1 702,925 + +0.0 702,925 + +0.1 702,927 + -2.7 702,927 + +0.1 702,927 + +1.0 702,933 - -1.9 702,933 - +0.4 702,933 - +0.2 702,934 + -2.1 702,935 - -0.5 702,997 - -0.9 703,094 + -0.4 703,102 + +0.2 703,174 + PGA1_c06830 0.18 -2.5 703,185 + PGA1_c06830 0.19 +0.5 703,192 + PGA1_c06830 0.20 -3.1 703,193 - PGA1_c06830 0.20 +1.3 703,262 + PGA1_c06830 0.28 -0.2 703,305 + PGA1_c06830 0.33 +0.0 703,308 + PGA1_c06830 0.33 -0.6 703,313 + PGA1_c06830 0.33 -0.6 703,313 + PGA1_c06830 0.33 -1.3 703,313 + PGA1_c06830 0.33 +1.0 703,313 + PGA1_c06830 0.33 -0.4 703,313 - PGA1_c06830 0.33 -2.0 703,321 - PGA1_c06830 0.34 +0.9 703,321 - PGA1_c06830 0.34 +0.5 703,335 - PGA1_c06830 0.36 +0.3 703,362 + PGA1_c06830 0.39 -0.5 703,411 - PGA1_c06830 0.44 -1.1 703,466 + PGA1_c06830 0.51 +1.3 703,513 + PGA1_c06830 0.56 +0.7 703,540 + PGA1_c06830 0.59 +0.1 703,548 - PGA1_c06830 0.60 -0.4 703,548 - PGA1_c06830 0.60 -0.6 703,568 + PGA1_c06830 0.62 +0.1 703,621 - PGA1_c06830 0.68 -1.4 703,637 + PGA1_c06830 0.70 +0.6 703,756 + PGA1_c06830 0.83 +0.1 703,756 + PGA1_c06830 0.83 +0.9 703,763 + PGA1_c06830 0.84 +0.4 703,781 + PGA1_c06830 0.86 +2.0 703,792 + PGA1_c06830 0.87 +1.4 703,818 - PGA1_c06830 0.90 +1.5 703,891 + +2.2 703,891 + +0.8 703,892 - +0.2 703,899 - +0.3 703,908 + +0.2 703,953 - +1.4 703,962 + -0.7 703,970 - +0.3 703,985 - +1.5 703,992 + +0.3 703,992 + -0.8 704,000 - -1.1 704,000 - -0.4 704,024 + -2.1 704,032 - +0.3 704,080 + +0.9 704,080 + +0.0 704,080 + -0.6 704,080 + +0.4 704,080 + -0.5 704,080 + -1.6 704,080 + +0.5 704,080 + -0.7 704,080 + +1.3 704,080 + -1.7 704,080 + +1.1 704,080 + -1.5 704,088 - -2.1 704,088 - +1.1 704,088 - +1.3 704,088 - -0.4 704,088 - -0.4 704,088 - -0.0 704,088 - +0.5 704,088 - -0.5 704,088 - -1.2 704,093 - -1.2 704,115 + -0.6 704,131 - +0.5 704,165 + -1.5 704,165 + -0.2 704,171 - +1.0 704,171 - +0.4 704,173 + +0.4 704,188 + -1.1 704,188 + +2.0 704,209 - -1.6 704,247 + +0.4 704,247 + -2.1 704,255 - PGA1_c06850 0.10 +0.7 704,255 - PGA1_c06850 0.10 +0.5 704,301 + PGA1_c06850 0.17 +1.5 704,309 - PGA1_c06850 0.18 -1.6 704,310 - PGA1_c06850 0.18 -0.6 704,357 + PGA1_c06850 0.25 -1.1 704,360 - PGA1_c06850 0.25 +1.7 704,364 + PGA1_c06850 0.26 -0.2 704,364 + PGA1_c06850 0.26 -1.1 704,364 + PGA1_c06850 0.26 +0.8 704,365 - PGA1_c06850 0.26 +2.9 704,365 - PGA1_c06850 0.26 +1.3 704,404 + PGA1_c06850 0.31 +0.3 704,407 - PGA1_c06850 0.32 -2.1 704,413 - PGA1_c06850 0.33 +0.7 704,413 - PGA1_c06850 0.33 -0.3 704,417 - PGA1_c06850 0.33 +0.7 704,423 - PGA1_c06850 0.34 +0.6 704,423 - PGA1_c06850 0.34 +0.7 704,425 + PGA1_c06850 0.34 +0.9 704,439 + PGA1_c06850 0.36 -0.9 704,454 + PGA1_c06850 0.38 +2.3 704,463 + PGA1_c06850 0.40 +1.8 704,463 + PGA1_c06850 0.40 +0.5 704,495 + PGA1_c06850 0.44 -1.3 704,496 + PGA1_c06850 0.44 +0.9 704,538 - PGA1_c06850 0.50 +0.5 704,549 - PGA1_c06850 0.52 -0.2 704,569 - PGA1_c06850 0.55 -0.2 704,593 + PGA1_c06850 0.58 +0.5 704,593 + PGA1_c06850 0.58 +1.8 704,601 - PGA1_c06850 0.59 +1.5 704,661 + PGA1_c06850 0.68 +0.6 704,781 - PGA1_c06850 0.84 +1.4 704,804 - PGA1_c06850 0.88 +1.3 704,804 - PGA1_c06850 0.88 +0.7 704,809 + PGA1_c06850 0.88 -0.9 704,809 + PGA1_c06850 0.88 -0.6 704,809 + PGA1_c06850 0.88 -0.7 704,843 - -0.3 704,850 - +0.0 704,862 + +1.0 704,862 + +2.0 704,870 - -1.3 704,870 - +1.8 704,870 - -0.3 704,889 + -1.0 704,890 + +0.3 704,897 - +0.5 704,898 - +0.1 704,898 - +0.2 704,900 + +1.7 704,900 + -1.9 704,900 + +0.1 704,900 + -0.2 704,900 + -0.7 704,900 + +1.4 704,900 + +0.3 704,908 - +1.3 704,908 - -0.2
Or see this region's nucleotide sequence