Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06460

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06440 and PGA1_c06450 are separated by 13 nucleotidesPGA1_c06450 and PGA1_c06460 are separated by 118 nucleotidesPGA1_c06460 and PGA1_c06470 are separated by 258 nucleotides PGA1_c06440: PGA1_c06440 - Uncharacterized protein conserved in bacteria, at 658,926 to 659,456 _c06440 PGA1_c06450: PGA1_c06450 - short-chain dehydrogenases/reductase domain-containing protein, at 659,470 to 660,111 _c06450 PGA1_c06460: PGA1_c06460 - Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain, at 660,230 to 662,008 _c06460 PGA1_c06470: PGA1_c06470 - glycyl-tRNA synthetase alpha subunit, at 662,267 to 663,196 _c06470 Position (kb) 660 661 662 663Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 659.239 kb on + strand, within PGA1_c06440at 659.259 kb on + strand, within PGA1_c06440at 659.273 kb on + strand, within PGA1_c06440at 659.274 kb on + strand, within PGA1_c06440at 659.284 kb on + strand, within PGA1_c06440at 659.312 kb on - strand, within PGA1_c06440at 659.369 kb on + strand, within PGA1_c06440at 659.384 kb on + strand, within PGA1_c06440at 659.415 kb on + strandat 659.420 kb on + strandat 659.437 kb on - strandat 659.534 kb on - strandat 659.550 kb on + strand, within PGA1_c06450at 659.566 kb on - strand, within PGA1_c06450at 659.581 kb on - strand, within PGA1_c06450at 659.639 kb on - strand, within PGA1_c06450at 659.711 kb on - strand, within PGA1_c06450at 659.713 kb on + strand, within PGA1_c06450at 659.713 kb on + strand, within PGA1_c06450at 659.721 kb on - strand, within PGA1_c06450at 659.721 kb on - strand, within PGA1_c06450at 659.726 kb on - strand, within PGA1_c06450at 659.726 kb on - strand, within PGA1_c06450at 659.730 kb on + strand, within PGA1_c06450at 659.795 kb on - strand, within PGA1_c06450at 659.798 kb on + strand, within PGA1_c06450at 659.839 kb on + strand, within PGA1_c06450at 659.864 kb on + strand, within PGA1_c06450at 659.870 kb on - strand, within PGA1_c06450at 659.887 kb on - strand, within PGA1_c06450at 660.028 kb on + strand, within PGA1_c06450at 660.059 kb on - strandat 660.059 kb on - strandat 660.092 kb on + strandat 660.141 kb on + strandat 660.155 kb on + strandat 660.187 kb on + strandat 660.223 kb on + strandat 660.269 kb on - strandat 660.271 kb on + strandat 660.283 kb on - strandat 660.327 kb on - strandat 660.331 kb on + strandat 660.331 kb on + strandat 660.331 kb on + strandat 660.331 kb on + strandat 660.339 kb on - strandat 660.349 kb on - strandat 660.349 kb on - strandat 660.349 kb on - strandat 660.360 kb on + strandat 660.387 kb on + strandat 660.387 kb on + strandat 660.387 kb on + strandat 660.431 kb on + strand, within PGA1_c06460at 660.457 kb on + strand, within PGA1_c06460at 660.465 kb on - strand, within PGA1_c06460at 660.567 kb on - strand, within PGA1_c06460at 660.620 kb on - strand, within PGA1_c06460at 660.672 kb on + strand, within PGA1_c06460at 660.673 kb on - strand, within PGA1_c06460at 660.673 kb on - strand, within PGA1_c06460at 660.777 kb on - strand, within PGA1_c06460at 660.777 kb on - strand, within PGA1_c06460at 660.791 kb on + strand, within PGA1_c06460at 660.791 kb on + strand, within PGA1_c06460at 660.841 kb on + strand, within PGA1_c06460at 660.849 kb on - strand, within PGA1_c06460at 660.849 kb on - strand, within PGA1_c06460at 660.857 kb on - strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.975 kb on + strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.983 kb on - strand, within PGA1_c06460at 660.993 kb on - strand, within PGA1_c06460at 661.017 kb on - strand, within PGA1_c06460at 661.034 kb on - strand, within PGA1_c06460at 661.054 kb on + strand, within PGA1_c06460at 661.169 kb on + strand, within PGA1_c06460at 661.188 kb on - strand, within PGA1_c06460at 661.203 kb on + strand, within PGA1_c06460at 661.308 kb on + strand, within PGA1_c06460at 661.336 kb on - strand, within PGA1_c06460at 661.349 kb on + strand, within PGA1_c06460at 661.357 kb on - strand, within PGA1_c06460at 661.361 kb on + strand, within PGA1_c06460at 661.362 kb on - strand, within PGA1_c06460at 661.411 kb on - strand, within PGA1_c06460at 661.492 kb on - strand, within PGA1_c06460at 661.492 kb on - strand, within PGA1_c06460at 661.562 kb on + strand, within PGA1_c06460at 661.661 kb on + strand, within PGA1_c06460at 661.865 kb on + strandat 661.873 kb on - strandat 661.965 kb on + strandat 662.019 kb on + strandat 662.027 kb on - strandat 662.037 kb on - strandat 662.073 kb on + strandat 662.086 kb on - strandat 662.132 kb on + strandat 662.164 kb on + strandat 662.172 kb on - strandat 662.172 kb on - strandat 662.172 kb on - strandat 662.172 kb on - strandat 662.172 kb on - strandat 662.180 kb on + strandat 662.192 kb on + strandat 662.200 kb on + strandat 662.200 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
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659,239 + PGA1_c06440 0.59 -0.5
659,259 + PGA1_c06440 0.63 -2.2
659,273 + PGA1_c06440 0.65 +1.0
659,274 + PGA1_c06440 0.66 +0.1
659,284 + PGA1_c06440 0.67 -0.6
659,312 - PGA1_c06440 0.73 -0.9
659,369 + PGA1_c06440 0.83 -0.2
659,384 + PGA1_c06440 0.86 -0.5
659,415 + -2.1
659,420 + +0.8
659,437 - +0.6
659,534 - -0.5
659,550 + PGA1_c06450 0.12 -2.3
659,566 - PGA1_c06450 0.15 +0.6
659,581 - PGA1_c06450 0.17 -2.2
659,639 - PGA1_c06450 0.26 -1.4
659,711 - PGA1_c06450 0.38 +0.4
659,713 + PGA1_c06450 0.38 +1.7
659,713 + PGA1_c06450 0.38 -0.1
659,721 - PGA1_c06450 0.39 +0.1
659,721 - PGA1_c06450 0.39 -0.3
659,726 - PGA1_c06450 0.40 +0.8
659,726 - PGA1_c06450 0.40 +1.7
659,730 + PGA1_c06450 0.40 +1.3
659,795 - PGA1_c06450 0.51 -1.0
659,798 + PGA1_c06450 0.51 +1.4
659,839 + PGA1_c06450 0.57 +0.7
659,864 + PGA1_c06450 0.61 -3.0
659,870 - PGA1_c06450 0.62 -0.8
659,887 - PGA1_c06450 0.65 +0.4
660,028 + PGA1_c06450 0.87 -0.2
660,059 - -0.3
660,059 - +1.8
660,092 + -0.2
660,141 + -1.6
660,155 + +0.3
660,187 + -0.3
660,223 + -0.1
660,269 - -0.8
660,271 + -0.2
660,283 - -3.2
660,327 - +0.6
660,331 + +1.0
660,331 + -1.6
660,331 + -2.6
660,331 + +0.7
660,339 - -2.4
660,349 - +0.4
660,349 - -2.4
660,349 - +1.1
660,360 + +0.4
660,387 + -0.4
660,387 + -1.9
660,387 + -3.3
660,431 + PGA1_c06460 0.11 -0.3
660,457 + PGA1_c06460 0.13 -0.3
660,465 - PGA1_c06460 0.13 -0.5
660,567 - PGA1_c06460 0.19 -2.1
660,620 - PGA1_c06460 0.22 -1.9
660,672 + PGA1_c06460 0.25 +0.0
660,673 - PGA1_c06460 0.25 -1.1
660,673 - PGA1_c06460 0.25 -0.7
660,777 - PGA1_c06460 0.31 -2.3
660,777 - PGA1_c06460 0.31 -1.9
660,791 + PGA1_c06460 0.32 -0.3
660,791 + PGA1_c06460 0.32 +0.1
660,841 + PGA1_c06460 0.34 -0.9
660,849 - PGA1_c06460 0.35 -0.3
660,849 - PGA1_c06460 0.35 +0.3
660,857 - PGA1_c06460 0.35 -2.3
660,975 + PGA1_c06460 0.42 +1.4
660,975 + PGA1_c06460 0.42 -0.9
660,975 + PGA1_c06460 0.42 +1.2
660,975 + PGA1_c06460 0.42 -1.9
660,975 + PGA1_c06460 0.42 -0.3
660,975 + PGA1_c06460 0.42 -4.0
660,975 + PGA1_c06460 0.42 +0.6
660,975 + PGA1_c06460 0.42 -1.4
660,975 + PGA1_c06460 0.42 +0.6
660,975 + PGA1_c06460 0.42 -2.5
660,983 - PGA1_c06460 0.42 +1.0
660,983 - PGA1_c06460 0.42 -0.9
660,983 - PGA1_c06460 0.42 +0.2
660,983 - PGA1_c06460 0.42 +0.1
660,983 - PGA1_c06460 0.42 -0.9
660,983 - PGA1_c06460 0.42 +0.5
660,983 - PGA1_c06460 0.42 -4.1
660,983 - PGA1_c06460 0.42 -0.1
660,983 - PGA1_c06460 0.42 -1.9
660,993 - PGA1_c06460 0.43 -2.1
661,017 - PGA1_c06460 0.44 -1.3
661,034 - PGA1_c06460 0.45 -2.3
661,054 + PGA1_c06460 0.46 -2.7
661,169 + PGA1_c06460 0.53 -1.9
661,188 - PGA1_c06460 0.54 -2.4
661,203 + PGA1_c06460 0.55 +0.4
661,308 + PGA1_c06460 0.61 -1.0
661,336 - PGA1_c06460 0.62 -1.1
661,349 + PGA1_c06460 0.63 -0.3
661,357 - PGA1_c06460 0.63 -0.2
661,361 + PGA1_c06460 0.64 -0.7
661,362 - PGA1_c06460 0.64 +0.1
661,411 - PGA1_c06460 0.66 -0.9
661,492 - PGA1_c06460 0.71 -1.1
661,492 - PGA1_c06460 0.71 -0.5
661,562 + PGA1_c06460 0.75 -2.6
661,661 + PGA1_c06460 0.80 +0.7
661,865 + +1.8
661,873 - -0.7
661,965 + -0.4
662,019 + +2.5
662,027 - -3.2
662,037 - -1.1
662,073 + +1.1
662,086 - +1.0
662,132 + +1.3
662,164 + -0.0
662,172 - -0.3
662,172 - +0.6
662,172 - -2.4
662,172 - -1.9
662,172 - -2.1
662,180 + +0.1
662,192 + +0.1
662,200 + +0.2
662,200 - -1.1

Or see this region's nucleotide sequence