Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06180 and PGA1_c06190 are separated by 137 nucleotides PGA1_c06190 and PGA1_c06200 are separated by 64 nucleotides PGA1_c06200 and PGA1_c06210 are separated by 12 nucleotides PGA1_c06210 and PGA1_c06220 are separated by 254 nucleotides
PGA1_c06180: PGA1_c06180 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 631,833 to 632,762
_c06180
PGA1_c06190: PGA1_c06190 - hypothetical protein, at 632,900 to 633,391
_c06190
PGA1_c06200: PGA1_c06200 - probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B, at 633,456 to 634,085
_c06200
PGA1_c06210: PGA1_c06210 - probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A, at 634,098 to 634,817
_c06210
PGA1_c06220: PGA1_c06220 - DNA topoisomerase TopA, at 635,072 to 637,774
_c06220
Position (kb) 633
634
635 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 632.473 kb on + strand, within PGA1_c06180 at 632.507 kb on - strand, within PGA1_c06180 at 632.519 kb on - strand, within PGA1_c06180 at 632.602 kb on - strand, within PGA1_c06180 at 632.618 kb on - strand, within PGA1_c06180 at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.711 kb on - strand at 632.713 kb on - strand at 632.721 kb on + strand at 632.742 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.774 kb on - strand at 632.776 kb on + strand at 632.776 kb on + strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.785 kb on - strand at 632.786 kb on - strand at 632.812 kb on + strand at 632.812 kb on + strand at 632.905 kb on - strand at 632.910 kb on + strand at 632.936 kb on + strand at 632.936 kb on + strand at 632.938 kb on + strand at 632.945 kb on - strand at 632.960 kb on + strand, within PGA1_c06190 at 632.966 kb on - strand, within PGA1_c06190 at 632.968 kb on + strand, within PGA1_c06190 at 632.976 kb on - strand, within PGA1_c06190 at 633.002 kb on + strand, within PGA1_c06190 at 633.010 kb on - strand, within PGA1_c06190 at 633.023 kb on + strand, within PGA1_c06190 at 633.026 kb on - strand, within PGA1_c06190 at 633.026 kb on - strand, within PGA1_c06190 at 633.039 kb on + strand, within PGA1_c06190 at 633.042 kb on - strand, within PGA1_c06190 at 633.103 kb on - strand, within PGA1_c06190 at 633.121 kb on + strand, within PGA1_c06190 at 633.137 kb on + strand, within PGA1_c06190 at 633.184 kb on - strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.220 kb on + strand, within PGA1_c06190 at 633.220 kb on + strand, within PGA1_c06190 at 633.222 kb on + strand, within PGA1_c06190 at 633.228 kb on - strand, within PGA1_c06190 at 633.257 kb on - strand, within PGA1_c06190 at 633.444 kb on + strand at 633.476 kb on + strand at 633.484 kb on - strand at 633.565 kb on - strand, within PGA1_c06200 at 633.610 kb on - strand, within PGA1_c06200 at 633.695 kb on - strand, within PGA1_c06200 at 633.705 kb on + strand, within PGA1_c06200 at 633.713 kb on - strand, within PGA1_c06200 at 633.731 kb on + strand, within PGA1_c06200 at 633.830 kb on - strand, within PGA1_c06200 at 633.857 kb on + strand, within PGA1_c06200 at 633.880 kb on + strand, within PGA1_c06200 at 633.890 kb on + strand, within PGA1_c06200 at 634.051 kb on - strand at 634.074 kb on + strand at 634.111 kb on - strand at 634.240 kb on + strand, within PGA1_c06210 at 634.414 kb on - strand, within PGA1_c06210 at 634.438 kb on + strand, within PGA1_c06210 at 634.456 kb on - strand, within PGA1_c06210 at 634.491 kb on - strand, within PGA1_c06210 at 634.583 kb on + strand, within PGA1_c06210 at 634.679 kb on - strand, within PGA1_c06210 at 634.733 kb on + strand, within PGA1_c06210 at 634.733 kb on + strand, within PGA1_c06210 at 634.779 kb on + strand at 634.834 kb on - strand at 634.853 kb on + strand at 634.853 kb on + strand at 634.861 kb on - strand at 634.935 kb on + strand at 634.974 kb on - strand at 634.976 kb on + strand at 634.976 kb on + strand at 635.018 kb on + strand at 635.034 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 632,473 + PGA1_c06180 0.69 +1.1 632,507 - PGA1_c06180 0.72 -0.1 632,519 - PGA1_c06180 0.74 -1.6 632,602 - PGA1_c06180 0.83 -0.5 632,618 - PGA1_c06180 0.84 -0.3 632,705 + +2.7 632,705 + -0.3 632,705 + -0.3 632,705 + -1.8 632,705 + +0.2 632,711 - +1.1 632,713 - -0.1 632,721 + +1.9 632,742 + -0.4 632,768 + -1.7 632,768 + -1.3 632,768 + +1.1 632,768 + -0.5 632,768 + -2.3 632,768 + +0.7 632,768 + -1.2 632,768 + -0.1 632,768 + +0.9 632,768 + +1.5 632,768 + +1.6 632,768 + -0.2 632,768 + -0.8 632,768 + +0.3 632,768 + +0.6 632,768 + +0.3 632,768 + +0.4 632,768 + +1.5 632,768 + +0.1 632,768 + -1.1 632,768 + -0.4 632,768 + +0.2 632,768 + +0.3 632,768 + -2.8 632,768 + +1.4 632,768 + -0.1 632,768 + -0.5 632,768 + +0.7 632,768 + +1.9 632,768 + +0.5 632,768 + +0.9 632,768 + +0.1 632,768 + +0.7 632,768 + +0.9 632,768 + -0.4 632,768 + +0.4 632,768 + +1.5 632,768 + -0.3 632,768 + -2.3 632,768 + +0.9 632,768 + +0.2 632,768 + +0.3 632,768 + +2.1 632,768 + +1.7 632,768 + +0.7 632,768 + -0.0 632,768 + +0.3 632,768 + -1.0 632,768 + -0.1 632,768 + +1.3 632,768 + -0.7 632,768 + -1.1 632,768 + -3.1 632,768 + -0.0 632,768 + +1.4 632,768 + -0.4 632,768 + -2.0 632,768 + -0.1 632,768 + +0.3 632,768 + -3.0 632,768 + -0.1 632,768 + -0.3 632,768 + +1.7 632,768 + +1.6 632,768 + -1.4 632,768 + -0.3 632,768 + -0.4 632,768 + -0.1 632,768 + +1.4 632,768 + +0.5 632,768 + +0.7 632,768 + -0.8 632,768 + +1.2 632,768 + +2.7 632,768 + -1.1 632,768 + -1.7 632,768 + +0.7 632,768 + +0.4 632,768 + -1.5 632,768 + +0.3 632,768 + -0.7 632,768 + +2.4 632,768 + -0.8 632,768 + +0.0 632,768 + -0.2 632,768 + +1.9 632,768 + -0.2 632,768 + -2.0 632,768 + +1.0 632,774 - +0.3 632,776 + +0.7 632,776 + -0.5 632,776 - -0.4 632,776 - +0.0 632,776 - +2.3 632,776 - +0.1 632,776 - +1.6 632,776 - +0.2 632,776 - -0.8 632,776 - -2.6 632,776 - +0.5 632,776 - +0.6 632,776 - -0.8 632,776 - +2.2 632,776 - +0.7 632,776 - -2.6 632,776 - +0.7 632,776 - -0.1 632,776 - -2.7 632,776 - -0.3 632,776 - +2.3 632,776 - +0.2 632,776 - +1.4 632,776 - -1.6 632,776 - -2.8 632,776 - -1.6 632,776 - +0.7 632,776 - -1.1 632,776 - -2.1 632,776 - -2.7 632,776 - -1.3 632,776 - -1.2 632,776 - +1.2 632,776 - -1.4 632,776 - -0.1 632,776 - +1.2 632,776 - +1.5 632,776 - +0.9 632,776 - +0.3 632,776 - -0.1 632,776 - +2.1 632,776 - +1.3 632,776 - +1.0 632,776 - +0.4 632,776 - +0.7 632,776 - +0.7 632,776 - +0.6 632,776 - -0.2 632,776 - +0.0 632,776 - +0.1 632,776 - -2.6 632,776 - -2.3 632,776 - -1.1 632,776 - -0.8 632,776 - +0.1 632,776 - -0.6 632,776 - +0.7 632,776 - -0.3 632,776 - -0.1 632,784 - +0.2 632,784 - +0.6 632,784 - -0.6 632,784 - -0.3 632,784 - +2.6 632,785 - -2.0 632,786 - -0.1 632,812 + -1.8 632,812 + +1.0 632,905 - +1.3 632,910 + -1.2 632,936 + +0.6 632,936 + +0.9 632,938 + +0.5 632,945 - +0.4 632,960 + PGA1_c06190 0.12 +2.7 632,966 - PGA1_c06190 0.13 +1.7 632,968 + PGA1_c06190 0.14 -0.8 632,976 - PGA1_c06190 0.15 +1.9 633,002 + PGA1_c06190 0.21 -2.8 633,010 - PGA1_c06190 0.22 +0.3 633,023 + PGA1_c06190 0.25 -0.9 633,026 - PGA1_c06190 0.26 +0.7 633,026 - PGA1_c06190 0.26 +0.9 633,039 + PGA1_c06190 0.28 -1.7 633,042 - PGA1_c06190 0.29 -0.8 633,103 - PGA1_c06190 0.41 +0.2 633,121 + PGA1_c06190 0.45 +1.5 633,137 + PGA1_c06190 0.48 +0.9 633,184 - PGA1_c06190 0.58 +0.7 633,201 + PGA1_c06190 0.61 +1.7 633,201 + PGA1_c06190 0.61 -1.3 633,201 + PGA1_c06190 0.61 -0.6 633,220 + PGA1_c06190 0.65 -1.1 633,220 + PGA1_c06190 0.65 +1.0 633,222 + PGA1_c06190 0.65 -1.3 633,228 - PGA1_c06190 0.67 +0.5 633,257 - PGA1_c06190 0.73 +0.3 633,444 + +0.0 633,476 + +1.5 633,484 - +0.3 633,565 - PGA1_c06200 0.17 +0.5 633,610 - PGA1_c06200 0.24 -0.3 633,695 - PGA1_c06200 0.38 +1.5 633,705 + PGA1_c06200 0.40 +2.1 633,713 - PGA1_c06200 0.41 +1.8 633,731 + PGA1_c06200 0.44 -1.1 633,830 - PGA1_c06200 0.59 -0.9 633,857 + PGA1_c06200 0.64 +1.6 633,880 + PGA1_c06200 0.67 +0.1 633,890 + PGA1_c06200 0.69 +2.0 634,051 - -1.6 634,074 + -0.3 634,111 - +2.4 634,240 + PGA1_c06210 0.20 +0.3 634,414 - PGA1_c06210 0.44 +0.5 634,438 + PGA1_c06210 0.47 -0.6 634,456 - PGA1_c06210 0.50 -0.5 634,491 - PGA1_c06210 0.55 +1.3 634,583 + PGA1_c06210 0.67 +0.9 634,679 - PGA1_c06210 0.81 +0.6 634,733 + PGA1_c06210 0.88 -0.3 634,733 + PGA1_c06210 0.88 -1.1 634,779 + -0.0 634,834 - -0.1 634,853 + -2.3 634,853 + +0.9 634,861 - -0.4 634,935 + +2.6 634,974 - +1.0 634,976 + +2.9 634,976 + -0.8 635,018 + +2.1 635,034 + -0.1
Or see this region's nucleotide sequence