Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05910

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05890 and PGA1_c05900 are separated by 114 nucleotidesPGA1_c05900 and PGA1_c05910 are separated by 3 nucleotidesPGA1_c05910 and PGA1_c05920 are separated by 13 nucleotides PGA1_c05890: PGA1_c05890 - thioesterase domain-containing protein, at 602,645 to 603,031 _c05890 PGA1_c05900: PGA1_c05900 - protein TolQ, at 603,146 to 603,841 _c05900 PGA1_c05910: PGA1_c05910 - putative biopolymer transport protein ExbD, at 603,845 to 604,333 _c05910 PGA1_c05920: PGA1_c05920 - hypothetical protein, at 604,347 to 605,486 _c05920 Position (kb) 603 604 605Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 602.879 kb on - strand, within PGA1_c05890at 602.887 kb on + strand, within PGA1_c05890at 602.895 kb on - strand, within PGA1_c05890at 602.895 kb on - strand, within PGA1_c05890at 602.895 kb on - strand, within PGA1_c05890at 602.900 kb on - strand, within PGA1_c05890at 602.900 kb on - strand, within PGA1_c05890at 602.900 kb on - strand, within PGA1_c05890at 603.086 kb on - strandat 604.337 kb on + strandat 604.337 kb on + strandat 604.337 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
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602,879 - PGA1_c05890 0.60 -0.5
602,887 + PGA1_c05890 0.63 +0.4
602,895 - PGA1_c05890 0.65 -0.1
602,895 - PGA1_c05890 0.65 +1.8
602,895 - PGA1_c05890 0.65 -0.7
602,900 - PGA1_c05890 0.66 -0.4
602,900 - PGA1_c05890 0.66 -0.2
602,900 - PGA1_c05890 0.66 -3.4
603,086 - +0.8
604,337 + +1.8
604,337 + -1.8
604,337 + -2.7

Or see this region's nucleotide sequence