Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05460 and PGA1_c05470 are separated by 84 nucleotides PGA1_c05470 and PGA1_c05480 are separated by 154 nucleotides PGA1_c05480 and PGA1_c05490 are separated by 43 nucleotides PGA1_c05490 and PGA1_c05500 are separated by 135 nucleotides
PGA1_c05460: PGA1_c05460 - transcriptional regulator, LysR family, at 558,026 to 559,000
_c05460
PGA1_c05470: PGA1_c05470 - hydroxyisourate hydrolase, at 559,085 to 559,456
_c05470
PGA1_c05480: PGA1_c05480 - OHCU decarboxylase domain-containing protein, at 559,611 to 561,026
_c05480
PGA1_c05490: PGA1_c05490 - ureidoglycolate hydrolase AllA, at 561,070 to 561,555
_c05490
PGA1_c05500: PGA1_c05500 - putative purine permease, at 561,691 to 563,118
_c05500
Position (kb) 559
560
561
562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 558.641 kb on + strand, within PGA1_c05460 at 558.641 kb on + strand, within PGA1_c05460 at 558.651 kb on + strand, within PGA1_c05460 at 558.654 kb on - strand, within PGA1_c05460 at 558.659 kb on - strand, within PGA1_c05460 at 558.659 kb on - strand, within PGA1_c05460 at 558.674 kb on - strand, within PGA1_c05460 at 558.731 kb on + strand, within PGA1_c05460 at 558.892 kb on + strand, within PGA1_c05460 at 558.900 kb on - strand, within PGA1_c05460 at 558.900 kb on - strand, within PGA1_c05460 at 558.952 kb on + strand at 558.974 kb on + strand at 559.003 kb on - strand at 559.392 kb on + strand, within PGA1_c05470 at 559.392 kb on + strand, within PGA1_c05470 at 559.412 kb on + strand, within PGA1_c05470 at 559.489 kb on - strand at 559.505 kb on + strand at 559.505 kb on + strand at 559.505 kb on + strand at 559.512 kb on + strand at 559.512 kb on + strand at 559.520 kb on - strand at 559.567 kb on - strand at 559.729 kb on + strand at 559.753 kb on + strand, within PGA1_c05480 at 559.775 kb on - strand, within PGA1_c05480 at 559.834 kb on - strand, within PGA1_c05480 at 559.874 kb on + strand, within PGA1_c05480 at 559.933 kb on + strand, within PGA1_c05480 at 559.933 kb on + strand, within PGA1_c05480 at 560.012 kb on - strand, within PGA1_c05480 at 560.014 kb on + strand, within PGA1_c05480 at 560.014 kb on + strand, within PGA1_c05480 at 560.014 kb on + strand, within PGA1_c05480 at 560.017 kb on - strand, within PGA1_c05480 at 560.022 kb on + strand, within PGA1_c05480 at 560.022 kb on - strand, within PGA1_c05480 at 560.077 kb on + strand, within PGA1_c05480 at 560.170 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.317 kb on + strand, within PGA1_c05480 at 560.325 kb on - strand, within PGA1_c05480 at 560.325 kb on - strand, within PGA1_c05480 at 560.325 kb on - strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.327 kb on + strand, within PGA1_c05480 at 560.335 kb on - strand, within PGA1_c05480 at 560.532 kb on + strand, within PGA1_c05480 at 560.596 kb on - strand, within PGA1_c05480 at 560.631 kb on + strand, within PGA1_c05480 at 560.631 kb on + strand, within PGA1_c05480 at 560.631 kb on + strand, within PGA1_c05480 at 560.639 kb on - strand, within PGA1_c05480 at 560.639 kb on - strand, within PGA1_c05480 at 560.639 kb on - strand, within PGA1_c05480 at 560.714 kb on - strand, within PGA1_c05480 at 560.757 kb on - strand, within PGA1_c05480 at 560.779 kb on - strand, within PGA1_c05480 at 560.786 kb on + strand, within PGA1_c05480 at 560.838 kb on - strand, within PGA1_c05480 at 560.923 kb on + strand at 560.923 kb on + strand at 560.923 kb on + strand at 560.923 kb on + strand at 560.923 kb on + strand at 560.931 kb on - strand at 560.931 kb on - strand at 560.931 kb on - strand at 561.023 kb on - strand at 561.025 kb on + strand at 561.028 kb on - strand at 561.038 kb on + strand at 561.046 kb on - strand at 561.106 kb on - strand at 561.107 kb on + strand at 561.168 kb on + strand, within PGA1_c05490 at 561.207 kb on - strand, within PGA1_c05490 at 561.237 kb on + strand, within PGA1_c05490 at 561.261 kb on + strand, within PGA1_c05490 at 561.284 kb on - strand, within PGA1_c05490 at 561.307 kb on + strand, within PGA1_c05490 at 561.334 kb on - strand, within PGA1_c05490 at 561.350 kb on + strand, within PGA1_c05490 at 561.355 kb on + strand, within PGA1_c05490 at 561.375 kb on - strand, within PGA1_c05490 at 561.416 kb on + strand, within PGA1_c05490 at 561.416 kb on + strand, within PGA1_c05490 at 561.434 kb on + strand, within PGA1_c05490 at 561.514 kb on + strand at 561.530 kb on + strand at 561.583 kb on - strand at 561.645 kb on - strand at 561.689 kb on - strand at 561.689 kb on - strand at 561.689 kb on - strand at 561.713 kb on + strand at 561.753 kb on + strand at 561.753 kb on + strand at 561.753 kb on + strand at 561.761 kb on - strand at 561.761 kb on - strand at 561.789 kb on + strand at 561.792 kb on - strand at 561.797 kb on - strand at 561.797 kb on - strand at 561.853 kb on + strand, within PGA1_c05500 at 561.853 kb on + strand, within PGA1_c05500 at 561.853 kb on + strand, within PGA1_c05500 at 561.853 kb on + strand, within PGA1_c05500 at 561.853 kb on + strand, within PGA1_c05500 at 561.861 kb on - strand, within PGA1_c05500 at 561.861 kb on - strand, within PGA1_c05500 at 561.914 kb on - strand, within PGA1_c05500 at 561.920 kb on + strand, within PGA1_c05500 at 561.976 kb on + strand, within PGA1_c05500 at 561.979 kb on - strand, within PGA1_c05500 at 561.984 kb on - strand, within PGA1_c05500
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 558,641 + PGA1_c05460 0.63 +0.2 558,641 + PGA1_c05460 0.63 -0.2 558,651 + PGA1_c05460 0.64 +0.8 558,654 - PGA1_c05460 0.64 -0.6 558,659 - PGA1_c05460 0.65 -0.7 558,659 - PGA1_c05460 0.65 -0.2 558,674 - PGA1_c05460 0.66 +0.9 558,731 + PGA1_c05460 0.72 -0.5 558,892 + PGA1_c05460 0.89 +2.1 558,900 - PGA1_c05460 0.90 +1.0 558,900 - PGA1_c05460 0.90 -0.3 558,952 + -2.6 558,974 + +1.5 559,003 - +0.2 559,392 + PGA1_c05470 0.83 -3.7 559,392 + PGA1_c05470 0.83 -1.6 559,412 + PGA1_c05470 0.88 -1.8 559,489 - +0.8 559,505 + -1.8 559,505 + -0.1 559,505 + +2.5 559,512 + +1.2 559,512 + +0.8 559,520 - -2.2 559,567 - -0.3 559,729 + +0.9 559,753 + PGA1_c05480 0.10 +0.8 559,775 - PGA1_c05480 0.12 -1.2 559,834 - PGA1_c05480 0.16 +0.5 559,874 + PGA1_c05480 0.19 +1.3 559,933 + PGA1_c05480 0.23 +2.8 559,933 + PGA1_c05480 0.23 -0.1 560,012 - PGA1_c05480 0.28 +0.0 560,014 + PGA1_c05480 0.28 -0.6 560,014 + PGA1_c05480 0.28 -0.1 560,014 + PGA1_c05480 0.28 +1.7 560,017 - PGA1_c05480 0.29 +0.6 560,022 + PGA1_c05480 0.29 +2.2 560,022 - PGA1_c05480 0.29 +0.4 560,077 + PGA1_c05480 0.33 +1.2 560,170 + PGA1_c05480 0.39 +0.1 560,317 + PGA1_c05480 0.50 -0.5 560,317 + PGA1_c05480 0.50 -1.3 560,317 + PGA1_c05480 0.50 -1.8 560,317 + PGA1_c05480 0.50 +0.4 560,317 + PGA1_c05480 0.50 +1.2 560,317 + PGA1_c05480 0.50 -0.2 560,325 - PGA1_c05480 0.50 -0.8 560,325 - PGA1_c05480 0.50 +1.8 560,325 - PGA1_c05480 0.50 +1.4 560,327 + PGA1_c05480 0.51 +2.1 560,327 + PGA1_c05480 0.51 -0.0 560,327 + PGA1_c05480 0.51 -1.6 560,327 + PGA1_c05480 0.51 +0.3 560,327 + PGA1_c05480 0.51 -0.6 560,327 + PGA1_c05480 0.51 +1.5 560,335 - PGA1_c05480 0.51 -1.6 560,532 + PGA1_c05480 0.65 -0.4 560,596 - PGA1_c05480 0.70 -0.1 560,631 + PGA1_c05480 0.72 +1.0 560,631 + PGA1_c05480 0.72 +0.6 560,631 + PGA1_c05480 0.72 -0.2 560,639 - PGA1_c05480 0.73 -1.4 560,639 - PGA1_c05480 0.73 +1.4 560,639 - PGA1_c05480 0.73 +0.8 560,714 - PGA1_c05480 0.78 +0.0 560,757 - PGA1_c05480 0.81 -2.3 560,779 - PGA1_c05480 0.82 -1.6 560,786 + PGA1_c05480 0.83 -0.5 560,838 - PGA1_c05480 0.87 -0.7 560,923 + -0.5 560,923 + +0.8 560,923 + -2.8 560,923 + -1.6 560,923 + -0.3 560,931 - +0.0 560,931 - +0.1 560,931 - -0.2 561,023 - -1.7 561,025 + -0.2 561,028 - +0.8 561,038 + +0.5 561,046 - -1.5 561,106 - +1.4 561,107 + -2.6 561,168 + PGA1_c05490 0.20 -2.4 561,207 - PGA1_c05490 0.28 +0.5 561,237 + PGA1_c05490 0.34 -0.4 561,261 + PGA1_c05490 0.39 -0.7 561,284 - PGA1_c05490 0.44 +0.4 561,307 + PGA1_c05490 0.49 +0.1 561,334 - PGA1_c05490 0.54 -0.0 561,350 + PGA1_c05490 0.58 +0.4 561,355 + PGA1_c05490 0.59 -1.6 561,375 - PGA1_c05490 0.63 -0.8 561,416 + PGA1_c05490 0.71 -0.8 561,416 + PGA1_c05490 0.71 +1.5 561,434 + PGA1_c05490 0.75 -1.0 561,514 + +0.8 561,530 + -0.2 561,583 - -1.8 561,645 - +0.1 561,689 - +0.2 561,689 - +1.5 561,689 - +2.9 561,713 + -1.0 561,753 + +0.5 561,753 + +1.4 561,753 + +0.2 561,761 - +0.9 561,761 - +2.6 561,789 + -0.8 561,792 - -0.6 561,797 - +1.1 561,797 - +0.1 561,853 + PGA1_c05500 0.11 +0.4 561,853 + PGA1_c05500 0.11 +1.7 561,853 + PGA1_c05500 0.11 -1.8 561,853 + PGA1_c05500 0.11 -1.6 561,853 + PGA1_c05500 0.11 +0.0 561,861 - PGA1_c05500 0.12 -1.2 561,861 - PGA1_c05500 0.12 -3.5 561,914 - PGA1_c05500 0.16 -1.9 561,920 + PGA1_c05500 0.16 -2.0 561,976 + PGA1_c05500 0.20 +0.4 561,979 - PGA1_c05500 0.20 +0.5 561,984 - PGA1_c05500 0.21 -1.2
Or see this region's nucleotide sequence