Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05240

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c05230 and PGA1_c05240 are separated by 327 nucleotidesPGA1_c05240 and PGA1_c05250 are separated by 31 nucleotides PGA1_c05230: PGA1_c05230 - ABC transporter, extracellular solute-binding protein, at 516,786 to 518,519 _c05230 PGA1_c05240: PGA1_c05240 - Predicted N6-adenine-specific DNA methylase, at 518,847 to 519,977 _c05240 PGA1_c05250: PGA1_c05250 - 2-keto-3-deoxy-galactonokinase, at 520,009 to 520,998 _c05250 Position (kb) 518 519 520Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 517.857 kb on + strand, within PGA1_c05230at 517.878 kb on + strand, within PGA1_c05230at 517.878 kb on - strand, within PGA1_c05230at 517.886 kb on + strand, within PGA1_c05230at 517.900 kb on - strand, within PGA1_c05230at 517.931 kb on - strand, within PGA1_c05230at 517.931 kb on - strand, within PGA1_c05230at 517.960 kb on + strand, within PGA1_c05230at 517.960 kb on + strand, within PGA1_c05230at 517.968 kb on - strand, within PGA1_c05230at 518.017 kb on + strand, within PGA1_c05230at 518.017 kb on + strand, within PGA1_c05230at 518.017 kb on + strand, within PGA1_c05230at 518.017 kb on + strand, within PGA1_c05230at 518.017 kb on + strand, within PGA1_c05230at 518.025 kb on - strand, within PGA1_c05230at 518.025 kb on - strand, within PGA1_c05230at 518.025 kb on - strand, within PGA1_c05230at 518.025 kb on - strand, within PGA1_c05230at 518.025 kb on - strand, within PGA1_c05230at 518.025 kb on - strand, within PGA1_c05230at 518.025 kb on - strand, within PGA1_c05230at 518.032 kb on + strand, within PGA1_c05230at 518.040 kb on - strand, within PGA1_c05230at 518.072 kb on - strand, within PGA1_c05230at 518.097 kb on + strand, within PGA1_c05230at 518.131 kb on + strand, within PGA1_c05230at 518.139 kb on - strand, within PGA1_c05230at 518.149 kb on - strand, within PGA1_c05230at 518.149 kb on - strand, within PGA1_c05230at 518.186 kb on + strand, within PGA1_c05230at 518.193 kb on + strand, within PGA1_c05230at 518.193 kb on + strand, within PGA1_c05230at 518.193 kb on + strand, within PGA1_c05230at 518.201 kb on - strand, within PGA1_c05230at 518.201 kb on - strand, within PGA1_c05230at 518.201 kb on - strand, within PGA1_c05230at 518.201 kb on - strand, within PGA1_c05230at 518.201 kb on - strand, within PGA1_c05230at 518.211 kb on - strand, within PGA1_c05230at 518.211 kb on - strand, within PGA1_c05230at 518.211 kb on - strand, within PGA1_c05230at 518.229 kb on + strand, within PGA1_c05230at 518.243 kb on + strand, within PGA1_c05230at 518.274 kb on + strand, within PGA1_c05230at 518.274 kb on + strand, within PGA1_c05230at 518.274 kb on + strand, within PGA1_c05230at 518.311 kb on + strand, within PGA1_c05230at 518.311 kb on + strand, within PGA1_c05230at 518.311 kb on + strand, within PGA1_c05230at 518.338 kb on + strand, within PGA1_c05230at 518.338 kb on + strand, within PGA1_c05230at 518.338 kb on + strand, within PGA1_c05230at 518.338 kb on + strand, within PGA1_c05230at 518.338 kb on + strand, within PGA1_c05230at 518.346 kb on - strandat 518.346 kb on - strandat 518.346 kb on - strandat 518.346 kb on - strandat 518.346 kb on - strandat 518.346 kb on - strandat 518.348 kb on + strandat 518.355 kb on - strandat 518.356 kb on - strandat 518.356 kb on - strandat 518.397 kb on + strandat 518.397 kb on + strandat 518.397 kb on + strandat 518.400 kb on - strandat 518.454 kb on + strandat 518.458 kb on - strandat 518.462 kb on - strandat 518.512 kb on - strandat 518.536 kb on + strandat 518.536 kb on + strandat 518.544 kb on - strandat 518.583 kb on + strandat 518.591 kb on - strandat 518.680 kb on - strandat 518.693 kb on + strandat 518.694 kb on - strandat 518.701 kb on - strandat 518.731 kb on + strandat 518.803 kb on + strandat 518.838 kb on + strandat 518.898 kb on + strandat 518.967 kb on + strand, within PGA1_c05240at 518.976 kb on - strand, within PGA1_c05240at 519.024 kb on + strand, within PGA1_c05240at 519.041 kb on + strand, within PGA1_c05240at 519.058 kb on + strand, within PGA1_c05240at 519.058 kb on + strand, within PGA1_c05240at 519.066 kb on - strand, within PGA1_c05240at 519.113 kb on + strand, within PGA1_c05240at 519.113 kb on + strand, within PGA1_c05240at 519.118 kb on + strand, within PGA1_c05240at 519.134 kb on - strand, within PGA1_c05240at 519.206 kb on + strand, within PGA1_c05240at 519.206 kb on + strand, within PGA1_c05240at 519.214 kb on - strand, within PGA1_c05240at 519.214 kb on - strand, within PGA1_c05240at 519.233 kb on + strand, within PGA1_c05240at 519.256 kb on + strand, within PGA1_c05240at 519.264 kb on - strand, within PGA1_c05240at 519.264 kb on - strand, within PGA1_c05240at 519.264 kb on - strand, within PGA1_c05240at 519.264 kb on - strand, within PGA1_c05240at 519.273 kb on + strand, within PGA1_c05240at 519.306 kb on - strand, within PGA1_c05240at 519.328 kb on - strand, within PGA1_c05240at 519.342 kb on + strand, within PGA1_c05240at 519.347 kb on + strand, within PGA1_c05240at 519.434 kb on - strand, within PGA1_c05240at 519.455 kb on + strand, within PGA1_c05240at 519.545 kb on - strand, within PGA1_c05240at 519.545 kb on - strand, within PGA1_c05240at 519.632 kb on - strand, within PGA1_c05240at 519.651 kb on - strand, within PGA1_c05240at 519.665 kb on - strand, within PGA1_c05240at 519.717 kb on - strand, within PGA1_c05240at 519.791 kb on + strand, within PGA1_c05240at 519.799 kb on - strand, within PGA1_c05240at 519.856 kb on + strand, within PGA1_c05240at 519.876 kb on - strandat 519.881 kb on + strandat 519.881 kb on + strandat 519.881 kb on + strandat 519.894 kb on + strandat 519.894 kb on + strandat 519.909 kb on + strandat 519.909 kb on + strandat 519.973 kb on + strandat 519.988 kb on - strandat 520.053 kb on - strandat 520.104 kb on - strandat 520.118 kb on + strand, within PGA1_c05250at 520.133 kb on + strand, within PGA1_c05250at 520.151 kb on - strand, within PGA1_c05250at 520.158 kb on + strand, within PGA1_c05250at 520.213 kb on - strand, within PGA1_c05250at 520.220 kb on + strand, within PGA1_c05250at 520.220 kb on + strand, within PGA1_c05250at 520.314 kb on - strand, within PGA1_c05250at 520.321 kb on - strand, within PGA1_c05250at 520.374 kb on + strand, within PGA1_c05250at 520.374 kb on + strand, within PGA1_c05250at 520.374 kb on + strand, within PGA1_c05250at 520.374 kb on + strand, within PGA1_c05250at 520.374 kb on + strand, within PGA1_c05250at 520.374 kb on + strand, within PGA1_c05250at 520.382 kb on - strand, within PGA1_c05250at 520.418 kb on + strand, within PGA1_c05250at 520.446 kb on - strand, within PGA1_c05250at 520.446 kb on - strand, within PGA1_c05250at 520.452 kb on - strand, within PGA1_c05250at 520.544 kb on - strand, within PGA1_c05250at 520.604 kb on + strand, within PGA1_c05250at 520.618 kb on - strand, within PGA1_c05250at 520.645 kb on - strand, within PGA1_c05250at 520.648 kb on - strand, within PGA1_c05250at 520.704 kb on - strand, within PGA1_c05250at 520.726 kb on + strand, within PGA1_c05250at 520.788 kb on + strand, within PGA1_c05250at 520.792 kb on + strand, within PGA1_c05250at 520.792 kb on + strand, within PGA1_c05250at 520.794 kb on - strand, within PGA1_c05250at 520.796 kb on - strand, within PGA1_c05250at 520.811 kb on + strand, within PGA1_c05250at 520.869 kb on + strand, within PGA1_c05250at 520.935 kb on - strandat 520.944 kb on + strandat 520.945 kb on + strandat 520.947 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
remove
517,857 + PGA1_c05230 0.62 -3.0
517,878 + PGA1_c05230 0.63 -2.2
517,878 - PGA1_c05230 0.63 -3.0
517,886 + PGA1_c05230 0.63 -1.1
517,900 - PGA1_c05230 0.64 +1.0
517,931 - PGA1_c05230 0.66 -1.8
517,931 - PGA1_c05230 0.66 +0.3
517,960 + PGA1_c05230 0.68 +0.2
517,960 + PGA1_c05230 0.68 +0.5
517,968 - PGA1_c05230 0.68 -0.8
518,017 + PGA1_c05230 0.71 +0.7
518,017 + PGA1_c05230 0.71 -0.5
518,017 + PGA1_c05230 0.71 +0.2
518,017 + PGA1_c05230 0.71 -0.3
518,017 + PGA1_c05230 0.71 -0.3
518,025 - PGA1_c05230 0.71 +1.8
518,025 - PGA1_c05230 0.71 +1.4
518,025 - PGA1_c05230 0.71 +0.0
518,025 - PGA1_c05230 0.71 -0.7
518,025 - PGA1_c05230 0.71 +1.5
518,025 - PGA1_c05230 0.71 +0.4
518,025 - PGA1_c05230 0.71 +1.7
518,032 + PGA1_c05230 0.72 -0.6
518,040 - PGA1_c05230 0.72 -0.8
518,072 - PGA1_c05230 0.74 +0.4
518,097 + PGA1_c05230 0.76 -0.4
518,131 + PGA1_c05230 0.78 -0.1
518,139 - PGA1_c05230 0.78 +0.1
518,149 - PGA1_c05230 0.79 -0.2
518,149 - PGA1_c05230 0.79 -2.8
518,186 + PGA1_c05230 0.81 -1.8
518,193 + PGA1_c05230 0.81 -1.9
518,193 + PGA1_c05230 0.81 +0.2
518,193 + PGA1_c05230 0.81 +0.4
518,201 - PGA1_c05230 0.82 -1.3
518,201 - PGA1_c05230 0.82 -0.6
518,201 - PGA1_c05230 0.82 +0.8
518,201 - PGA1_c05230 0.82 +0.2
518,201 - PGA1_c05230 0.82 -0.0
518,211 - PGA1_c05230 0.82 -0.1
518,211 - PGA1_c05230 0.82 +0.3
518,211 - PGA1_c05230 0.82 -0.0
518,229 + PGA1_c05230 0.83 +1.8
518,243 + PGA1_c05230 0.84 +1.1
518,274 + PGA1_c05230 0.86 -0.0
518,274 + PGA1_c05230 0.86 +2.5
518,274 + PGA1_c05230 0.86 -0.2
518,311 + PGA1_c05230 0.88 +1.4
518,311 + PGA1_c05230 0.88 +1.1
518,311 + PGA1_c05230 0.88 -1.1
518,338 + PGA1_c05230 0.90 +2.0
518,338 + PGA1_c05230 0.90 -1.3
518,338 + PGA1_c05230 0.90 -0.6
518,338 + PGA1_c05230 0.90 +1.6
518,338 + PGA1_c05230 0.90 +0.2
518,346 - -0.3
518,346 - -1.0
518,346 - +0.1
518,346 - -1.2
518,346 - +0.3
518,346 - -1.0
518,348 + +1.1
518,355 - +4.9
518,356 - +0.2
518,356 - +0.1
518,397 + -0.6
518,397 + +0.9
518,397 + -0.2
518,400 - -0.4
518,454 + +1.1
518,458 - +0.8
518,462 - +0.6
518,512 - +2.1
518,536 + +0.0
518,536 + +0.1
518,544 - +0.6
518,583 + -1.0
518,591 - -0.1
518,680 - +0.3
518,693 + +1.4
518,694 - +1.0
518,701 - -1.2
518,731 + +1.3
518,803 + -0.9
518,838 + +0.1
518,898 + +0.9
518,967 + PGA1_c05240 0.11 -3.6
518,976 - PGA1_c05240 0.11 -0.1
519,024 + PGA1_c05240 0.16 +1.4
519,041 + PGA1_c05240 0.17 -2.2
519,058 + PGA1_c05240 0.19 -0.7
519,058 + PGA1_c05240 0.19 +0.4
519,066 - PGA1_c05240 0.19 +0.3
519,113 + PGA1_c05240 0.24 -0.2
519,113 + PGA1_c05240 0.24 -0.8
519,118 + PGA1_c05240 0.24 +0.7
519,134 - PGA1_c05240 0.25 +0.5
519,206 + PGA1_c05240 0.32 -0.9
519,206 + PGA1_c05240 0.32 -0.9
519,214 - PGA1_c05240 0.32 +0.3
519,214 - PGA1_c05240 0.32 -1.0
519,233 + PGA1_c05240 0.34 -1.1
519,256 + PGA1_c05240 0.36 -0.3
519,264 - PGA1_c05240 0.37 -1.4
519,264 - PGA1_c05240 0.37 +1.0
519,264 - PGA1_c05240 0.37 -1.7
519,264 - PGA1_c05240 0.37 -0.4
519,273 + PGA1_c05240 0.38 -0.0
519,306 - PGA1_c05240 0.41 -0.7
519,328 - PGA1_c05240 0.43 -1.2
519,342 + PGA1_c05240 0.44 -1.7
519,347 + PGA1_c05240 0.44 -0.0
519,434 - PGA1_c05240 0.52 -0.9
519,455 + PGA1_c05240 0.54 -0.1
519,545 - PGA1_c05240 0.62 -0.7
519,545 - PGA1_c05240 0.62 -1.3
519,632 - PGA1_c05240 0.69 -0.9
519,651 - PGA1_c05240 0.71 -0.1
519,665 - PGA1_c05240 0.72 +0.3
519,717 - PGA1_c05240 0.77 +0.9
519,791 + PGA1_c05240 0.83 -0.2
519,799 - PGA1_c05240 0.84 +1.2
519,856 + PGA1_c05240 0.89 -0.3
519,876 - -2.4
519,881 + -0.3
519,881 + -0.8
519,881 + +0.9
519,894 + +0.6
519,894 + -0.0
519,909 + -1.0
519,909 + +0.0
519,973 + +0.4
519,988 - -0.1
520,053 - -0.1
520,104 - +0.8
520,118 + PGA1_c05250 0.11 -1.9
520,133 + PGA1_c05250 0.13 -0.2
520,151 - PGA1_c05250 0.14 +2.2
520,158 + PGA1_c05250 0.15 -0.0
520,213 - PGA1_c05250 0.21 -1.6
520,220 + PGA1_c05250 0.21 +0.4
520,220 + PGA1_c05250 0.21 -2.0
520,314 - PGA1_c05250 0.31 -0.8
520,321 - PGA1_c05250 0.32 +0.1
520,374 + PGA1_c05250 0.37 -0.6
520,374 + PGA1_c05250 0.37 -1.5
520,374 + PGA1_c05250 0.37 -1.6
520,374 + PGA1_c05250 0.37 +2.0
520,374 + PGA1_c05250 0.37 +0.5
520,374 + PGA1_c05250 0.37 -0.4
520,382 - PGA1_c05250 0.38 -2.4
520,418 + PGA1_c05250 0.41 -0.7
520,446 - PGA1_c05250 0.44 +1.0
520,446 - PGA1_c05250 0.44 -1.2
520,452 - PGA1_c05250 0.45 -2.4
520,544 - PGA1_c05250 0.54 +0.3
520,604 + PGA1_c05250 0.60 -0.1
520,618 - PGA1_c05250 0.62 -1.4
520,645 - PGA1_c05250 0.64 +1.3
520,648 - PGA1_c05250 0.65 +1.3
520,704 - PGA1_c05250 0.70 +0.0
520,726 + PGA1_c05250 0.72 -0.8
520,788 + PGA1_c05250 0.79 -0.1
520,792 + PGA1_c05250 0.79 -0.3
520,792 + PGA1_c05250 0.79 +1.2
520,794 - PGA1_c05250 0.79 -2.9
520,796 - PGA1_c05250 0.79 +0.0
520,811 + PGA1_c05250 0.81 +0.1
520,869 + PGA1_c05250 0.87 -1.2
520,935 - -2.7
520,944 + -3.2
520,945 + -1.0
520,947 - +0.1

Or see this region's nucleotide sequence