Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05160 and PGA1_c05170 overlap by 11 nucleotides PGA1_c05170 and PGA1_c05180 are separated by 156 nucleotides PGA1_c05180 and PGA1_c05190 overlap by 1 nucleotides PGA1_c05190 and PGA1_c05200 are separated by 14 nucleotides
PGA1_c05160: PGA1_c05160 - peptidase M56-like protein, at 510,787 to 511,938
_c05160
PGA1_c05170: PGA1_c05170 - penicillinase repressor blaI/mecI-like protein, at 511,928 to 512,323
_c05170
PGA1_c05180: PGA1_c05180 - Predicted small integral membrane protein, at 512,480 to 512,758
_c05180
PGA1_c05190: PGA1_c05190 - ABC transporter, inner membrane component, at 512,758 to 513,555
_c05190
PGA1_c05200: PGA1_c05200 - putative ABC transporter, inner membrane component, at 513,570 to 514,433
_c05200
Position (kb) 512
513 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 511.510 kb on - strand, within PGA1_c05160 at 511.567 kb on - strand, within PGA1_c05160 at 511.603 kb on - strand, within PGA1_c05160 at 511.638 kb on + strand, within PGA1_c05160 at 511.638 kb on + strand, within PGA1_c05160 at 511.638 kb on + strand, within PGA1_c05160 at 511.646 kb on - strand, within PGA1_c05160 at 511.646 kb on - strand, within PGA1_c05160 at 511.664 kb on + strand, within PGA1_c05160 at 511.725 kb on - strand, within PGA1_c05160 at 511.725 kb on - strand, within PGA1_c05160 at 511.772 kb on - strand, within PGA1_c05160 at 511.822 kb on - strand, within PGA1_c05160 at 511.897 kb on + strand at 511.913 kb on - strand at 512.040 kb on + strand, within PGA1_c05170 at 512.040 kb on + strand, within PGA1_c05170 at 512.042 kb on + strand, within PGA1_c05170 at 512.071 kb on - strand, within PGA1_c05170 at 512.099 kb on - strand, within PGA1_c05170 at 512.104 kb on - strand, within PGA1_c05170 at 512.104 kb on - strand, within PGA1_c05170 at 512.280 kb on + strand, within PGA1_c05170 at 512.292 kb on + strand at 512.306 kb on + strand at 512.332 kb on + strand at 512.340 kb on - strand at 512.354 kb on - strand at 512.354 kb on - strand at 512.355 kb on - strand at 512.355 kb on - strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.365 kb on - strand at 512.365 kb on - strand at 512.365 kb on - strand at 512.367 kb on - strand at 512.400 kb on + strand at 512.400 kb on + strand at 512.408 kb on - strand at 512.420 kb on + strand at 512.430 kb on + strand at 512.430 kb on + strand at 512.443 kb on - strand at 512.457 kb on - strand at 512.467 kb on + strand at 512.554 kb on + strand, within PGA1_c05180 at 512.562 kb on - strand, within PGA1_c05180 at 512.562 kb on - strand, within PGA1_c05180 at 512.562 kb on - strand, within PGA1_c05180 at 512.591 kb on - strand, within PGA1_c05180 at 512.648 kb on - strand, within PGA1_c05180 at 512.725 kb on - strand, within PGA1_c05180 at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.736 kb on + strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.755 kb on + strand at 512.755 kb on + strand at 512.755 kb on + strand at 512.755 kb on + strand at 512.755 kb on + strand at 512.865 kb on + strand, within PGA1_c05190 at 512.873 kb on - strand, within PGA1_c05190 at 512.901 kb on - strand, within PGA1_c05190 at 512.936 kb on + strand, within PGA1_c05190 at 512.944 kb on - strand, within PGA1_c05190 at 512.944 kb on - strand, within PGA1_c05190 at 512.963 kb on - strand, within PGA1_c05190 at 512.997 kb on + strand, within PGA1_c05190 at 512.997 kb on + strand, within PGA1_c05190 at 512.997 kb on + strand, within PGA1_c05190 at 513.002 kb on + strand, within PGA1_c05190 at 513.002 kb on + strand, within PGA1_c05190 at 513.010 kb on - strand, within PGA1_c05190 at 513.046 kb on + strand, within PGA1_c05190 at 513.054 kb on - strand, within PGA1_c05190 at 513.054 kb on - strand, within PGA1_c05190 at 513.068 kb on + strand, within PGA1_c05190 at 513.121 kb on - strand, within PGA1_c05190 at 513.166 kb on - strand, within PGA1_c05190 at 513.170 kb on + strand, within PGA1_c05190 at 513.172 kb on + strand, within PGA1_c05190 at 513.178 kb on - strand, within PGA1_c05190 at 513.239 kb on + strand, within PGA1_c05190 at 513.249 kb on + strand, within PGA1_c05190 at 513.291 kb on - strand, within PGA1_c05190 at 513.315 kb on + strand, within PGA1_c05190 at 513.315 kb on + strand, within PGA1_c05190 at 513.402 kb on - strand, within PGA1_c05190 at 513.420 kb on + strand, within PGA1_c05190 at 513.428 kb on - strand, within PGA1_c05190 at 513.428 kb on - strand, within PGA1_c05190 at 513.527 kb on - strand at 513.565 kb on - strand at 513.575 kb on - strand at 513.598 kb on + strand at 513.598 kb on + strand at 513.598 kb on + strand at 513.606 kb on + strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.646 kb on - strand at 513.685 kb on - strand, within PGA1_c05200 at 513.721 kb on - strand, within PGA1_c05200 at 513.746 kb on + strand, within PGA1_c05200
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 511,510 - PGA1_c05160 0.63 -0.0 511,567 - PGA1_c05160 0.68 +0.5 511,603 - PGA1_c05160 0.71 -0.2 511,638 + PGA1_c05160 0.74 +0.6 511,638 + PGA1_c05160 0.74 +1.5 511,638 + PGA1_c05160 0.74 +0.3 511,646 - PGA1_c05160 0.75 -0.9 511,646 - PGA1_c05160 0.75 +0.5 511,664 + PGA1_c05160 0.76 +0.5 511,725 - PGA1_c05160 0.81 -1.4 511,725 - PGA1_c05160 0.81 -1.6 511,772 - PGA1_c05160 0.86 -0.1 511,822 - PGA1_c05160 0.90 +0.9 511,897 + +4.9 511,913 - +1.8 512,040 + PGA1_c05170 0.28 +0.7 512,040 + PGA1_c05170 0.28 -2.2 512,042 + PGA1_c05170 0.29 -0.8 512,071 - PGA1_c05170 0.36 -1.9 512,099 - PGA1_c05170 0.43 +0.1 512,104 - PGA1_c05170 0.44 -0.7 512,104 - PGA1_c05170 0.44 -1.7 512,280 + PGA1_c05170 0.89 +0.2 512,292 + -1.9 512,306 + -3.5 512,332 + +0.2 512,340 - -1.9 512,354 - -1.4 512,354 - +0.6 512,355 - +0.5 512,355 - -0.1 512,357 + -1.0 512,357 + +0.8 512,357 + -1.0 512,357 + -2.7 512,357 + -0.5 512,357 + +0.1 512,357 + +1.0 512,357 + -1.2 512,365 - -2.9 512,365 - -1.7 512,365 - +0.6 512,367 - -0.2 512,400 + -2.1 512,400 + +0.0 512,408 - -0.8 512,420 + +3.2 512,430 + +0.0 512,430 + +0.3 512,443 - -2.7 512,457 - +1.0 512,467 + +0.9 512,554 + PGA1_c05180 0.27 -0.4 512,562 - PGA1_c05180 0.29 -1.7 512,562 - PGA1_c05180 0.29 -2.3 512,562 - PGA1_c05180 0.29 -0.4 512,591 - PGA1_c05180 0.40 -1.2 512,648 - PGA1_c05180 0.60 -0.3 512,725 - PGA1_c05180 0.88 +0.0 512,735 + +1.1 512,735 + -1.0 512,735 + +0.2 512,735 + -1.5 512,735 + -0.1 512,735 + +0.4 512,735 + +0.8 512,735 + -0.5 512,735 + -0.4 512,735 + -0.2 512,736 + -0.7 512,743 - -0.2 512,743 - -2.9 512,743 - -0.6 512,743 - +0.3 512,743 - -1.7 512,743 - +0.4 512,743 - +0.1 512,755 + -0.8 512,755 + -0.1 512,755 + -2.7 512,755 + -0.2 512,755 + -0.9 512,865 + PGA1_c05190 0.13 +1.6 512,873 - PGA1_c05190 0.14 +1.2 512,901 - PGA1_c05190 0.18 -1.8 512,936 + PGA1_c05190 0.22 +1.8 512,944 - PGA1_c05190 0.23 -0.7 512,944 - PGA1_c05190 0.23 -0.6 512,963 - PGA1_c05190 0.26 +0.4 512,997 + PGA1_c05190 0.30 -0.1 512,997 + PGA1_c05190 0.30 -0.3 512,997 + PGA1_c05190 0.30 +0.1 513,002 + PGA1_c05190 0.31 -1.7 513,002 + PGA1_c05190 0.31 -0.8 513,010 - PGA1_c05190 0.32 +0.3 513,046 + PGA1_c05190 0.36 -0.1 513,054 - PGA1_c05190 0.37 -1.4 513,054 - PGA1_c05190 0.37 +1.3 513,068 + PGA1_c05190 0.39 +0.2 513,121 - PGA1_c05190 0.45 -1.2 513,166 - PGA1_c05190 0.51 -0.1 513,170 + PGA1_c05190 0.52 -2.0 513,172 + PGA1_c05190 0.52 -0.1 513,178 - PGA1_c05190 0.53 +1.6 513,239 + PGA1_c05190 0.60 -0.4 513,249 + PGA1_c05190 0.62 +1.5 513,291 - PGA1_c05190 0.67 -1.7 513,315 + PGA1_c05190 0.70 -2.0 513,315 + PGA1_c05190 0.70 -0.1 513,402 - PGA1_c05190 0.81 +0.2 513,420 + PGA1_c05190 0.83 +0.3 513,428 - PGA1_c05190 0.84 -0.1 513,428 - PGA1_c05190 0.84 -1.3 513,527 - -1.3 513,565 - +0.5 513,575 - +1.2 513,598 + -1.6 513,598 + +1.1 513,598 + -1.4 513,606 + -0.0 513,606 - +0.4 513,606 - -0.6 513,606 - +0.7 513,606 - -1.7 513,606 - +1.2 513,606 - -0.6 513,646 - -1.5 513,685 - PGA1_c05200 0.13 +1.6 513,721 - PGA1_c05200 0.17 +0.7 513,746 + PGA1_c05200 0.20 -0.3
Or see this region's nucleotide sequence