Strain Fitness in Marinobacter adhaerens HP15 around HP15_3976

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3974 and HP15_3975 overlap by 4 nucleotidesHP15_3975 and HP15_3976 are separated by 87 nucleotidesHP15_3976 and HP15_3977 are separated by 73 nucleotidesHP15_3977 and HP15_3978 are separated by 8 nucleotides HP15_3974: HP15_3974 - short chain dehydrogenase, at 4,204,414 to 4,205,196 _3974 HP15_3975: HP15_3975 - conserved hypothetical protein, secreted, at 4,205,193 to 4,205,813 _3975 HP15_3976: HP15_3976 - protein containing diguanylate cyclase, predicted domains, at 4,205,901 to 4,207,421 _3976 HP15_3977: HP15_3977 - metallo-beta-lactamase family protein, at 4,207,495 to 4,208,370 _3977 HP15_3978: HP15_3978 - sulfate permease, at 4,208,379 to 4,210,112 _3978 Position (kb) 4205 4206 4207 4208Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 4204.905 kb on - strand, within HP15_3974at 4204.928 kb on + strand, within HP15_3974at 4204.956 kb on - strand, within HP15_3974at 4204.978 kb on + strand, within HP15_3974at 4205.001 kb on - strand, within HP15_3974at 4205.126 kb on - strandat 4205.185 kb on - strandat 4205.253 kb on + strandat 4205.331 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.418 kb on - strand, within HP15_3975at 4205.418 kb on - strand, within HP15_3975at 4205.418 kb on - strand, within HP15_3975at 4205.465 kb on + strand, within HP15_3975at 4205.465 kb on + strand, within HP15_3975at 4205.549 kb on - strand, within HP15_3975at 4205.690 kb on + strand, within HP15_3975at 4205.696 kb on + strand, within HP15_3975at 4205.704 kb on - strand, within HP15_3975at 4205.787 kb on + strandat 4205.787 kb on + strandat 4205.846 kb on - strandat 4205.887 kb on + strandat 4206.119 kb on + strand, within HP15_3976at 4206.211 kb on - strand, within HP15_3976at 4206.211 kb on - strand, within HP15_3976at 4206.232 kb on + strand, within HP15_3976at 4206.252 kb on - strand, within HP15_3976at 4206.271 kb on + strand, within HP15_3976at 4206.272 kb on - strand, within HP15_3976at 4206.279 kb on - strand, within HP15_3976at 4206.427 kb on + strand, within HP15_3976at 4206.512 kb on + strand, within HP15_3976at 4206.512 kb on + strand, within HP15_3976at 4206.553 kb on - strand, within HP15_3976at 4206.553 kb on - strand, within HP15_3976at 4206.569 kb on + strand, within HP15_3976at 4206.577 kb on - strand, within HP15_3976at 4206.577 kb on - strand, within HP15_3976at 4206.638 kb on - strand, within HP15_3976at 4206.654 kb on + strand, within HP15_3976at 4206.762 kb on + strand, within HP15_3976at 4206.854 kb on + strand, within HP15_3976at 4206.862 kb on - strand, within HP15_3976at 4207.008 kb on - strand, within HP15_3976at 4207.029 kb on - strand, within HP15_3976at 4207.031 kb on + strand, within HP15_3976at 4207.039 kb on - strand, within HP15_3976at 4207.107 kb on + strand, within HP15_3976at 4207.128 kb on - strand, within HP15_3976at 4207.206 kb on - strand, within HP15_3976at 4207.224 kb on + strand, within HP15_3976at 4207.238 kb on - strand, within HP15_3976at 4207.259 kb on - strand, within HP15_3976at 4207.487 kb on + strandat 4207.487 kb on + strandat 4207.487 kb on + strandat 4207.487 kb on + strandat 4207.495 kb on - strandat 4207.495 kb on - strandat 4207.495 kb on - strandat 4207.501 kb on + strandat 4207.501 kb on + strandat 4207.564 kb on - strandat 4207.690 kb on - strand, within HP15_3977at 4207.734 kb on - strand, within HP15_3977at 4207.742 kb on + strand, within HP15_3977at 4207.786 kb on - strand, within HP15_3977at 4207.853 kb on + strand, within HP15_3977at 4207.907 kb on + strand, within HP15_3977at 4207.909 kb on + strand, within HP15_3977at 4207.915 kb on - strand, within HP15_3977at 4207.915 kb on - strand, within HP15_3977at 4207.917 kb on - strand, within HP15_3977at 4207.939 kb on - strand, within HP15_3977at 4207.939 kb on - strand, within HP15_3977at 4207.939 kb on - strand, within HP15_3977at 4207.939 kb on - strand, within HP15_3977at 4207.958 kb on + strand, within HP15_3977at 4208.058 kb on + strand, within HP15_3977at 4208.068 kb on + strand, within HP15_3977at 4208.077 kb on + strand, within HP15_3977at 4208.135 kb on + strand, within HP15_3977at 4208.151 kb on + strand, within HP15_3977at 4208.159 kb on - strand, within HP15_3977at 4208.259 kb on - strand, within HP15_3977at 4208.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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4,204,905 - HP15_3974 0.63 +1.3
4,204,928 + HP15_3974 0.66 -0.7
4,204,956 - HP15_3974 0.69 -1.5
4,204,978 + HP15_3974 0.72 -1.4
4,205,001 - HP15_3974 0.75 +0.5
4,205,126 - -0.9
4,205,185 - -0.4
4,205,253 + -0.6
4,205,331 + HP15_3975 0.22 -1.2
4,205,410 + HP15_3975 0.35 -0.3
4,205,410 + HP15_3975 0.35 -1.1
4,205,410 + HP15_3975 0.35 -1.0
4,205,410 + HP15_3975 0.35 -0.7
4,205,410 + HP15_3975 0.35 -0.9
4,205,410 + HP15_3975 0.35 -1.7
4,205,418 - HP15_3975 0.36 -0.9
4,205,418 - HP15_3975 0.36 -1.2
4,205,418 - HP15_3975 0.36 -0.9
4,205,465 + HP15_3975 0.44 -0.5
4,205,465 + HP15_3975 0.44 -0.4
4,205,549 - HP15_3975 0.57 +0.0
4,205,690 + HP15_3975 0.80 -0.9
4,205,696 + HP15_3975 0.81 -1.6
4,205,704 - HP15_3975 0.82 -0.0
4,205,787 + -2.8
4,205,787 + -0.7
4,205,846 - +0.0
4,205,887 + +0.1
4,206,119 + HP15_3976 0.14 -1.3
4,206,211 - HP15_3976 0.20 -0.2
4,206,211 - HP15_3976 0.20 +0.3
4,206,232 + HP15_3976 0.22 -1.2
4,206,252 - HP15_3976 0.23 +0.2
4,206,271 + HP15_3976 0.24 -1.1
4,206,272 - HP15_3976 0.24 -1.2
4,206,279 - HP15_3976 0.25 +0.2
4,206,427 + HP15_3976 0.35 -1.1
4,206,512 + HP15_3976 0.40 -0.7
4,206,512 + HP15_3976 0.40 -1.1
4,206,553 - HP15_3976 0.43 +2.4
4,206,553 - HP15_3976 0.43 -2.4
4,206,569 + HP15_3976 0.44 -2.0
4,206,577 - HP15_3976 0.44 +1.9
4,206,577 - HP15_3976 0.44 -0.7
4,206,638 - HP15_3976 0.48 -2.0
4,206,654 + HP15_3976 0.50 -1.5
4,206,762 + HP15_3976 0.57 -0.4
4,206,854 + HP15_3976 0.63 -1.7
4,206,862 - HP15_3976 0.63 -1.0
4,207,008 - HP15_3976 0.73 -1.3
4,207,029 - HP15_3976 0.74 -0.9
4,207,031 + HP15_3976 0.74 -0.0
4,207,039 - HP15_3976 0.75 +0.2
4,207,107 + HP15_3976 0.79 -1.1
4,207,128 - HP15_3976 0.81 -1.0
4,207,206 - HP15_3976 0.86 -3.0
4,207,224 + HP15_3976 0.87 -1.4
4,207,238 - HP15_3976 0.88 -1.6
4,207,259 - HP15_3976 0.89 -0.9
4,207,487 + -1.6
4,207,487 + -2.0
4,207,487 + +0.3
4,207,487 + -0.1
4,207,495 - +4.5
4,207,495 - +4.5
4,207,495 - +5.0
4,207,501 + -0.8
4,207,501 + -2.1
4,207,564 - +8.0
4,207,690 - HP15_3977 0.22 +6.9
4,207,734 - HP15_3977 0.27 +8.0
4,207,742 + HP15_3977 0.28 -0.4
4,207,786 - HP15_3977 0.33 +7.0
4,207,853 + HP15_3977 0.41 -1.2
4,207,907 + HP15_3977 0.47 -1.4
4,207,909 + HP15_3977 0.47 -0.8
4,207,915 - HP15_3977 0.48 +7.2
4,207,915 - HP15_3977 0.48 +7.3
4,207,917 - HP15_3977 0.48 +5.8
4,207,939 - HP15_3977 0.51 +7.5
4,207,939 - HP15_3977 0.51 +7.3
4,207,939 - HP15_3977 0.51 +6.5
4,207,939 - HP15_3977 0.51 +7.2
4,207,958 + HP15_3977 0.53 -1.4
4,208,058 + HP15_3977 0.64 -0.9
4,208,068 + HP15_3977 0.65 -1.4
4,208,077 + HP15_3977 0.66 -3.0
4,208,135 + HP15_3977 0.73 -0.9
4,208,151 + HP15_3977 0.75 -1.5
4,208,159 - HP15_3977 0.76 +4.5
4,208,259 - HP15_3977 0.87 +5.9
4,208,305 + -1.0

Or see this region's nucleotide sequence