Strain Fitness in Marinobacter adhaerens HP15 around HP15_3972

Experiment: m.b. perchlorate 100 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3970 and HP15_3971 are separated by 4 nucleotidesHP15_3971 and HP15_3972 are separated by 308 nucleotidesHP15_3972 and HP15_3973 are separated by 79 nucleotides HP15_3970: HP15_3970 - glycosyl transferase, group 2 family protein, at 4,199,936 to 4,200,910 _3970 HP15_3971: HP15_3971 - GtrA family protein, at 4,200,915 to 4,201,289 _3971 HP15_3972: HP15_3972 - conserved hypothetical protein, at 4,201,598 to 4,202,257 _3972 HP15_3973: HP15_3973 - long-chain-fatty-acid-CoA ligase, at 4,202,337 to 4,204,427 _3973 Position (kb) 4201 4202 4203Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4200.621 kb on - strand, within HP15_3970at 4200.623 kb on + strand, within HP15_3970at 4200.641 kb on + strand, within HP15_3970at 4200.677 kb on - strand, within HP15_3970at 4200.677 kb on - strand, within HP15_3970at 4200.774 kb on - strand, within HP15_3970at 4200.865 kb on + strandat 4200.915 kb on - strandat 4200.917 kb on + strandat 4201.221 kb on + strand, within HP15_3971at 4201.272 kb on - strandat 4201.402 kb on + strandat 4201.526 kb on + strandat 4201.531 kb on + strandat 4201.534 kb on - strandat 4201.534 kb on - strandat 4201.549 kb on - strandat 4201.629 kb on + strandat 4201.634 kb on + strandat 4201.637 kb on - strandat 4201.757 kb on + strand, within HP15_3972at 4201.765 kb on - strand, within HP15_3972at 4201.787 kb on + strand, within HP15_3972at 4201.978 kb on - strand, within HP15_3972at 4202.032 kb on - strand, within HP15_3972at 4202.139 kb on - strand, within HP15_3972at 4202.288 kb on - strandat 4202.382 kb on + strandat 4202.385 kb on - strandat 4202.385 kb on - strandat 4202.385 kb on - strandat 4202.390 kb on - strandat 4202.392 kb on + strandat 4202.400 kb on - strandat 4202.471 kb on - strandat 4202.508 kb on - strandat 4202.545 kb on - strandat 4202.555 kb on + strand, within HP15_3973at 4202.726 kb on + strand, within HP15_3973at 4202.736 kb on - strand, within HP15_3973at 4202.794 kb on - strand, within HP15_3973at 4202.794 kb on - strand, within HP15_3973at 4202.829 kb on + strand, within HP15_3973at 4202.885 kb on - strand, within HP15_3973at 4203.052 kb on - strand, within HP15_3973at 4203.076 kb on + strand, within HP15_3973at 4203.100 kb on + strand, within HP15_3973at 4203.129 kb on - strand, within HP15_3973at 4203.178 kb on - strand, within HP15_3973at 4203.232 kb on + strand, within HP15_3973

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
remove
4,200,621 - HP15_3970 0.70 +0.3
4,200,623 + HP15_3970 0.70 -1.3
4,200,641 + HP15_3970 0.72 -1.6
4,200,677 - HP15_3970 0.76 -0.9
4,200,677 - HP15_3970 0.76 +0.3
4,200,774 - HP15_3970 0.86 -1.0
4,200,865 + +0.1
4,200,915 - +0.8
4,200,917 + +1.3
4,201,221 + HP15_3971 0.82 +0.2
4,201,272 - -0.5
4,201,402 + +0.3
4,201,526 + -1.2
4,201,531 + -1.0
4,201,534 - -0.3
4,201,534 - -0.8
4,201,549 - +0.3
4,201,629 + +0.5
4,201,634 + +1.1
4,201,637 - -1.3
4,201,757 + HP15_3972 0.24 -1.4
4,201,765 - HP15_3972 0.25 +1.1
4,201,787 + HP15_3972 0.29 -0.0
4,201,978 - HP15_3972 0.58 -0.5
4,202,032 - HP15_3972 0.66 +1.9
4,202,139 - HP15_3972 0.82 +0.4
4,202,288 - -0.1
4,202,382 + +0.6
4,202,385 - -0.3
4,202,385 - +0.1
4,202,385 - -1.2
4,202,390 - -0.8
4,202,392 + +1.1
4,202,400 - +1.3
4,202,471 - -0.5
4,202,508 - -2.8
4,202,545 - +0.5
4,202,555 + HP15_3973 0.10 -0.8
4,202,726 + HP15_3973 0.19 -0.8
4,202,736 - HP15_3973 0.19 +1.7
4,202,794 - HP15_3973 0.22 -0.0
4,202,794 - HP15_3973 0.22 +1.3
4,202,829 + HP15_3973 0.24 +0.7
4,202,885 - HP15_3973 0.26 -0.4
4,203,052 - HP15_3973 0.34 -0.9
4,203,076 + HP15_3973 0.35 +0.0
4,203,100 + HP15_3973 0.36 -0.9
4,203,129 - HP15_3973 0.38 +0.3
4,203,178 - HP15_3973 0.40 -0.4
4,203,232 + HP15_3973 0.43 -0.4

Or see this region's nucleotide sequence