Experiment: m.b. perchlorate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3970 and HP15_3971 are separated by 4 nucleotides HP15_3971 and HP15_3972 are separated by 308 nucleotides HP15_3972 and HP15_3973 are separated by 79 nucleotides
HP15_3970: HP15_3970 - glycosyl transferase, group 2 family protein, at 4,199,936 to 4,200,910
_3970
HP15_3971: HP15_3971 - GtrA family protein, at 4,200,915 to 4,201,289
_3971
HP15_3972: HP15_3972 - conserved hypothetical protein, at 4,201,598 to 4,202,257
_3972
HP15_3973: HP15_3973 - long-chain-fatty-acid-CoA ligase, at 4,202,337 to 4,204,427
_3973
Position (kb)
4201
4202
4203 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4200.621 kb on - strand, within HP15_3970 at 4200.623 kb on + strand, within HP15_3970 at 4200.641 kb on + strand, within HP15_3970 at 4200.677 kb on - strand, within HP15_3970 at 4200.677 kb on - strand, within HP15_3970 at 4200.774 kb on - strand, within HP15_3970 at 4200.865 kb on + strand at 4200.915 kb on - strand at 4200.917 kb on + strand at 4201.221 kb on + strand, within HP15_3971 at 4201.272 kb on - strand at 4201.402 kb on + strand at 4201.526 kb on + strand at 4201.531 kb on + strand at 4201.534 kb on - strand at 4201.534 kb on - strand at 4201.549 kb on - strand at 4201.629 kb on + strand at 4201.634 kb on + strand at 4201.637 kb on - strand at 4201.757 kb on + strand, within HP15_3972 at 4201.765 kb on - strand, within HP15_3972 at 4201.787 kb on + strand, within HP15_3972 at 4201.978 kb on - strand, within HP15_3972 at 4202.032 kb on - strand, within HP15_3972 at 4202.139 kb on - strand, within HP15_3972 at 4202.288 kb on - strand at 4202.382 kb on + strand at 4202.385 kb on - strand at 4202.385 kb on - strand at 4202.385 kb on - strand at 4202.390 kb on - strand at 4202.392 kb on + strand at 4202.400 kb on - strand at 4202.471 kb on - strand at 4202.508 kb on - strand at 4202.545 kb on - strand at 4202.555 kb on + strand, within HP15_3973 at 4202.726 kb on + strand, within HP15_3973 at 4202.736 kb on - strand, within HP15_3973 at 4202.794 kb on - strand, within HP15_3973 at 4202.794 kb on - strand, within HP15_3973 at 4202.829 kb on + strand, within HP15_3973 at 4202.885 kb on - strand, within HP15_3973 at 4203.052 kb on - strand, within HP15_3973 at 4203.076 kb on + strand, within HP15_3973 at 4203.100 kb on + strand, within HP15_3973 at 4203.129 kb on - strand, within HP15_3973 at 4203.178 kb on - strand, within HP15_3973 at 4203.232 kb on + strand, within HP15_3973
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM remove 4,200,621 - HP15_3970 0.70 +0.3 4,200,623 + HP15_3970 0.70 -1.3 4,200,641 + HP15_3970 0.72 -1.6 4,200,677 - HP15_3970 0.76 -0.9 4,200,677 - HP15_3970 0.76 +0.3 4,200,774 - HP15_3970 0.86 -1.0 4,200,865 + +0.1 4,200,915 - +0.8 4,200,917 + +1.3 4,201,221 + HP15_3971 0.82 +0.2 4,201,272 - -0.5 4,201,402 + +0.3 4,201,526 + -1.2 4,201,531 + -1.0 4,201,534 - -0.3 4,201,534 - -0.8 4,201,549 - +0.3 4,201,629 + +0.5 4,201,634 + +1.1 4,201,637 - -1.3 4,201,757 + HP15_3972 0.24 -1.4 4,201,765 - HP15_3972 0.25 +1.1 4,201,787 + HP15_3972 0.29 -0.0 4,201,978 - HP15_3972 0.58 -0.5 4,202,032 - HP15_3972 0.66 +1.9 4,202,139 - HP15_3972 0.82 +0.4 4,202,288 - -0.1 4,202,382 + +0.6 4,202,385 - -0.3 4,202,385 - +0.1 4,202,385 - -1.2 4,202,390 - -0.8 4,202,392 + +1.1 4,202,400 - +1.3 4,202,471 - -0.5 4,202,508 - -2.8 4,202,545 - +0.5 4,202,555 + HP15_3973 0.10 -0.8 4,202,726 + HP15_3973 0.19 -0.8 4,202,736 - HP15_3973 0.19 +1.7 4,202,794 - HP15_3973 0.22 -0.0 4,202,794 - HP15_3973 0.22 +1.3 4,202,829 + HP15_3973 0.24 +0.7 4,202,885 - HP15_3973 0.26 -0.4 4,203,052 - HP15_3973 0.34 -0.9 4,203,076 + HP15_3973 0.35 +0.0 4,203,100 + HP15_3973 0.36 -0.9 4,203,129 - HP15_3973 0.38 +0.3 4,203,178 - HP15_3973 0.40 -0.4 4,203,232 + HP15_3973 0.43 -0.4
Or see this region's nucleotide sequence