Strain Fitness in Marinobacter adhaerens HP15 around HP15_3867

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3865 and HP15_3866 are separated by 143 nucleotidesHP15_3866 and HP15_3867 are separated by 14 nucleotidesHP15_3867 and HP15_3868 are separated by 2 nucleotidesHP15_3868 and HP15_3869 are separated by 150 nucleotides HP15_3865: HP15_3865 - periplasmic binding protein, at 4,092,165 to 4,092,953 _3865 HP15_3866: HP15_3866 - metal dependent phosphohydrolase, at 4,093,097 to 4,093,690 _3866 HP15_3867: HP15_3867 - SPFH domain, Band 7 family protein, at 4,093,705 to 4,094,739 _3867 HP15_3868: HP15_3868 - nodulation efficiency, NfeD-like protein, at 4,094,742 to 4,095,248 _3868 HP15_3869: HP15_3869 - short-chain dehydrogenase/reductase SDR, at 4,095,399 to 4,096,220 _3869 Position (kb) 4093 4094 4095Strain fitness (log2 ratio) -2 -1 0 1at 4092.762 kb on + strand, within HP15_3865at 4092.798 kb on - strand, within HP15_3865at 4093.139 kb on - strandat 4093.209 kb on - strand, within HP15_3866at 4093.270 kb on - strand, within HP15_3866at 4093.311 kb on + strand, within HP15_3866at 4093.319 kb on - strand, within HP15_3866at 4093.388 kb on + strand, within HP15_3866at 4093.498 kb on + strand, within HP15_3866at 4093.506 kb on - strand, within HP15_3866at 4093.506 kb on - strand, within HP15_3866at 4093.664 kb on - strandat 4093.664 kb on - strandat 4093.675 kb on - strandat 4093.824 kb on - strand, within HP15_3867at 4093.824 kb on - strand, within HP15_3867at 4093.871 kb on + strand, within HP15_3867at 4093.996 kb on + strand, within HP15_3867at 4094.059 kb on - strand, within HP15_3867at 4094.180 kb on + strand, within HP15_3867at 4094.251 kb on - strand, within HP15_3867at 4094.310 kb on + strand, within HP15_3867at 4094.320 kb on + strand, within HP15_3867at 4094.520 kb on - strand, within HP15_3867at 4094.631 kb on + strand, within HP15_3867at 4094.665 kb on - strandat 4094.705 kb on + strandat 4094.987 kb on + strand, within HP15_3868at 4094.995 kb on - strand, within HP15_3868at 4095.095 kb on - strand, within HP15_3868at 4095.224 kb on - strandat 4095.246 kb on - strandat 4095.403 kb on - strandat 4095.442 kb on + strandat 4095.453 kb on + strandat 4095.461 kb on - strandat 4095.461 kb on - strandat 4095.478 kb on - strandat 4095.494 kb on - strand, within HP15_3869at 4095.499 kb on + strand, within HP15_3869at 4095.509 kb on + strand, within HP15_3869at 4095.637 kb on + strand, within HP15_3869at 4095.645 kb on - strand, within HP15_3869at 4095.683 kb on + strand, within HP15_3869at 4095.698 kb on + strand, within HP15_3869

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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4,092,762 + HP15_3865 0.76 +0.0
4,092,798 - HP15_3865 0.80 -0.0
4,093,139 - -0.7
4,093,209 - HP15_3866 0.19 +1.2
4,093,270 - HP15_3866 0.29 +0.5
4,093,311 + HP15_3866 0.36 +0.7
4,093,319 - HP15_3866 0.37 -0.5
4,093,388 + HP15_3866 0.49 -1.1
4,093,498 + HP15_3866 0.68 -0.7
4,093,506 - HP15_3866 0.69 +0.1
4,093,506 - HP15_3866 0.69 -0.2
4,093,664 - +1.5
4,093,664 - +0.9
4,093,675 - -0.1
4,093,824 - HP15_3867 0.11 +0.3
4,093,824 - HP15_3867 0.11 -0.9
4,093,871 + HP15_3867 0.16 -0.1
4,093,996 + HP15_3867 0.28 -2.3
4,094,059 - HP15_3867 0.34 -0.7
4,094,180 + HP15_3867 0.46 -0.4
4,094,251 - HP15_3867 0.53 -1.3
4,094,310 + HP15_3867 0.58 +0.0
4,094,320 + HP15_3867 0.59 +0.8
4,094,520 - HP15_3867 0.79 +0.7
4,094,631 + HP15_3867 0.89 -0.5
4,094,665 - +1.5
4,094,705 + -0.4
4,094,987 + HP15_3868 0.48 -0.4
4,094,995 - HP15_3868 0.50 +0.7
4,095,095 - HP15_3868 0.70 -0.1
4,095,224 - -0.4
4,095,246 - -0.4
4,095,403 - -0.6
4,095,442 + +1.0
4,095,453 + -0.8
4,095,461 - +0.5
4,095,461 - +0.0
4,095,478 - -0.1
4,095,494 - HP15_3869 0.12 -0.4
4,095,499 + HP15_3869 0.12 -0.1
4,095,509 + HP15_3869 0.13 -0.4
4,095,637 + HP15_3869 0.29 -0.7
4,095,645 - HP15_3869 0.30 +0.0
4,095,683 + HP15_3869 0.35 -0.1
4,095,698 + HP15_3869 0.36 +0.2

Or see this region's nucleotide sequence