Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03980

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03970 and PGA1_c03980 are separated by 129 nucleotidesPGA1_c03980 and PGA1_c03990 are separated by 64 nucleotidesPGA1_c03990 and PGA1_c04000 overlap by 11 nucleotides PGA1_c03970: PGA1_c03970 - putative lipoprotein, at 384,486 to 385,481 _c03970 PGA1_c03980: PGA1_c03980 - putative acetyltransferase, at 385,611 to 386,027 _c03980 PGA1_c03990: PGA1_c03990 - putative peptidase M22, at 386,092 to 386,688 _c03990 PGA1_c04000: PGA1_c04000 - nitrogen fixation protein nifU-like protein, at 386,678 to 387,241 _c04000 Position (kb) 385 386 387Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 384.640 kb on + strand, within PGA1_c03970at 384.648 kb on - strand, within PGA1_c03970at 384.648 kb on - strand, within PGA1_c03970at 384.659 kb on - strand, within PGA1_c03970at 384.668 kb on - strand, within PGA1_c03970at 384.677 kb on + strand, within PGA1_c03970at 384.685 kb on - strand, within PGA1_c03970at 384.698 kb on + strand, within PGA1_c03970at 384.736 kb on + strand, within PGA1_c03970at 384.857 kb on + strand, within PGA1_c03970at 384.890 kb on + strand, within PGA1_c03970at 384.891 kb on - strand, within PGA1_c03970at 384.897 kb on + strand, within PGA1_c03970at 384.898 kb on - strand, within PGA1_c03970at 384.898 kb on - strand, within PGA1_c03970at 384.898 kb on - strand, within PGA1_c03970at 384.955 kb on + strand, within PGA1_c03970at 385.035 kb on + strand, within PGA1_c03970at 385.048 kb on - strand, within PGA1_c03970at 385.089 kb on + strand, within PGA1_c03970at 385.097 kb on - strand, within PGA1_c03970at 385.133 kb on - strand, within PGA1_c03970at 385.133 kb on - strand, within PGA1_c03970at 385.278 kb on - strand, within PGA1_c03970at 385.293 kb on - strand, within PGA1_c03970at 385.325 kb on + strand, within PGA1_c03970at 385.330 kb on + strand, within PGA1_c03970at 385.330 kb on + strand, within PGA1_c03970at 385.330 kb on + strand, within PGA1_c03970at 385.330 kb on + strand, within PGA1_c03970at 385.338 kb on - strand, within PGA1_c03970at 385.338 kb on - strand, within PGA1_c03970at 385.338 kb on - strand, within PGA1_c03970at 385.355 kb on - strand, within PGA1_c03970at 385.391 kb on + strandat 385.461 kb on - strandat 385.476 kb on + strandat 385.476 kb on + strandat 385.484 kb on - strandat 385.518 kb on + strandat 385.525 kb on - strandat 385.534 kb on - strandat 385.535 kb on - strandat 385.535 kb on - strandat 385.573 kb on + strandat 385.574 kb on - strandat 385.591 kb on - strandat 385.591 kb on - strandat 385.621 kb on - strandat 385.621 kb on - strandat 385.621 kb on - strandat 385.637 kb on + strandat 385.645 kb on + strandat 385.645 kb on + strandat 385.645 kb on + strandat 385.645 kb on + strandat 385.647 kb on + strandat 385.647 kb on + strandat 385.647 kb on + strandat 385.647 kb on + strandat 385.647 kb on + strandat 385.653 kb on - strand, within PGA1_c03980at 385.653 kb on - strand, within PGA1_c03980at 385.655 kb on - strand, within PGA1_c03980at 385.655 kb on - strand, within PGA1_c03980at 385.659 kb on + strand, within PGA1_c03980at 385.667 kb on - strand, within PGA1_c03980at 385.685 kb on + strand, within PGA1_c03980at 385.693 kb on - strand, within PGA1_c03980at 385.726 kb on + strand, within PGA1_c03980at 385.836 kb on - strand, within PGA1_c03980at 385.836 kb on - strand, within PGA1_c03980at 385.838 kb on + strand, within PGA1_c03980at 385.852 kb on + strand, within PGA1_c03980at 385.858 kb on + strand, within PGA1_c03980at 385.872 kb on + strand, within PGA1_c03980at 385.934 kb on + strand, within PGA1_c03980at 385.961 kb on - strand, within PGA1_c03980at 386.021 kb on + strandat 386.024 kb on - strandat 386.071 kb on + strandat 386.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
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384,640 + PGA1_c03970 0.15 +0.4
384,648 - PGA1_c03970 0.16 +0.1
384,648 - PGA1_c03970 0.16 -1.0
384,659 - PGA1_c03970 0.17 +0.0
384,668 - PGA1_c03970 0.18 +1.3
384,677 + PGA1_c03970 0.19 +1.5
384,685 - PGA1_c03970 0.20 +1.1
384,698 + PGA1_c03970 0.21 -0.6
384,736 + PGA1_c03970 0.25 +1.6
384,857 + PGA1_c03970 0.37 +0.1
384,890 + PGA1_c03970 0.41 +1.6
384,891 - PGA1_c03970 0.41 -2.6
384,897 + PGA1_c03970 0.41 +0.9
384,898 - PGA1_c03970 0.41 +2.1
384,898 - PGA1_c03970 0.41 +2.4
384,898 - PGA1_c03970 0.41 +0.2
384,955 + PGA1_c03970 0.47 -0.3
385,035 + PGA1_c03970 0.55 +0.7
385,048 - PGA1_c03970 0.56 +1.4
385,089 + PGA1_c03970 0.61 -0.3
385,097 - PGA1_c03970 0.61 +1.1
385,133 - PGA1_c03970 0.65 -1.4
385,133 - PGA1_c03970 0.65 +1.7
385,278 - PGA1_c03970 0.80 +0.6
385,293 - PGA1_c03970 0.81 +2.4
385,325 + PGA1_c03970 0.84 +0.2
385,330 + PGA1_c03970 0.85 +1.0
385,330 + PGA1_c03970 0.85 +2.6
385,330 + PGA1_c03970 0.85 +1.5
385,330 + PGA1_c03970 0.85 +0.6
385,338 - PGA1_c03970 0.86 -2.7
385,338 - PGA1_c03970 0.86 -0.3
385,338 - PGA1_c03970 0.86 +0.2
385,355 - PGA1_c03970 0.87 +1.2
385,391 + +1.2
385,461 - +1.0
385,476 + +1.6
385,476 + +0.4
385,484 - -0.2
385,518 + +1.4
385,525 - +0.3
385,534 - -0.0
385,535 - +1.9
385,535 - +1.3
385,573 + -0.1
385,574 - -0.1
385,591 - -2.3
385,591 - +0.3
385,621 - -0.6
385,621 - +0.8
385,621 - -0.4
385,637 + -1.8
385,645 + +0.6
385,645 + +0.8
385,645 + -2.4
385,645 + -2.1
385,647 + +0.7
385,647 + +0.3
385,647 + -3.9
385,647 + +1.2
385,647 + +0.3
385,653 - PGA1_c03980 0.10 +1.0
385,653 - PGA1_c03980 0.10 -0.8
385,655 - PGA1_c03980 0.11 +0.8
385,655 - PGA1_c03980 0.11 +0.8
385,659 + PGA1_c03980 0.12 -2.4
385,667 - PGA1_c03980 0.13 -0.4
385,685 + PGA1_c03980 0.18 +0.9
385,693 - PGA1_c03980 0.20 -0.5
385,726 + PGA1_c03980 0.28 -0.9
385,836 - PGA1_c03980 0.54 -1.1
385,836 - PGA1_c03980 0.54 +0.0
385,838 + PGA1_c03980 0.54 +0.4
385,852 + PGA1_c03980 0.58 -0.1
385,858 + PGA1_c03980 0.59 +0.6
385,872 + PGA1_c03980 0.63 -1.0
385,934 + PGA1_c03980 0.77 -0.4
385,961 - PGA1_c03980 0.84 -0.6
386,021 + -0.4
386,024 - +0.6
386,071 + -0.7
386,073 - +0.2

Or see this region's nucleotide sequence