Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00180

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00170 and PGA1_78p00180 overlap by 8 nucleotidesPGA1_78p00180 and PGA1_78p00190 are separated by 6 nucleotides PGA1_78p00170: PGA1_78p00170 - putative sn-glycerol-3-phosphate transport system permease protein UgpA, at 20,341 to 21,273 _78p00170 PGA1_78p00180: PGA1_78p00180 - putative sn-glycerol-3-phosphate transport system permease protein UgpE, at 21,266 to 22,195 _78p00180 PGA1_78p00190: PGA1_78p00190 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 22,202 to 23,287 _78p00190 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1 2at 20.593 kb on - strand, within PGA1_78p00170at 20.735 kb on + strand, within PGA1_78p00170at 20.828 kb on + strand, within PGA1_78p00170at 21.104 kb on - strand, within PGA1_78p00170at 21.172 kb on - strand, within PGA1_78p00170at 21.439 kb on + strand, within PGA1_78p00180at 21.517 kb on + strand, within PGA1_78p00180at 21.554 kb on + strand, within PGA1_78p00180at 21.753 kb on + strand, within PGA1_78p00180at 22.116 kb on + strandat 22.192 kb on - strandat 22.427 kb on - strand, within PGA1_78p00190at 22.499 kb on + strand, within PGA1_78p00190at 22.861 kb on - strand, within PGA1_78p00190at 23.154 kb on - strand, within PGA1_78p00190

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
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20,593 - PGA1_78p00170 0.27 -0.1
20,735 + PGA1_78p00170 0.42 -0.8
20,828 + PGA1_78p00170 0.52 +0.2
21,104 - PGA1_78p00170 0.82 -0.5
21,172 - PGA1_78p00170 0.89 +2.3
21,439 + PGA1_78p00180 0.19 +1.7
21,517 + PGA1_78p00180 0.27 -1.9
21,554 + PGA1_78p00180 0.31 +1.3
21,753 + PGA1_78p00180 0.52 -1.1
22,116 + +0.7
22,192 - +1.9
22,427 - PGA1_78p00190 0.21 -0.1
22,499 + PGA1_78p00190 0.27 -0.1
22,861 - PGA1_78p00190 0.61 +0.5
23,154 - PGA1_78p00190 0.88 -0.1

Or see this region's nucleotide sequence