Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02360 and PGA1_262p02370 are separated by 9 nucleotides PGA1_262p02370 and PGA1_262p02380 overlap by 4 nucleotides PGA1_262p02380 and PGA1_262p02390 are separated by 81 nucleotides PGA1_262p02390 and PGA1_262p02400 are separated by 88 nucleotides
PGA1_262p02360: PGA1_262p02360 - putative histidine-binding periplasmic protein, at 258,269 to 259,048
_262p02360
PGA1_262p02370: PGA1_262p02370 - putative histidine transport system permease protein HisQ, at 259,058 to 259,810
_262p02370
PGA1_262p02380: PGA1_262p02380 - putative histidine transport system permease protein HisM, at 259,807 to 260,583
_262p02380
PGA1_262p02390: PGA1_262p02390 - hypothetical protein, at 260,665 to 261,360
_262p02390
PGA1_262p02400: PGA1_262p02400 - hypothetical protein, at 261,449 to 261,649
_262p02400
Position (kb) 259
260
261 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 258.876 kb on - strand, within PGA1_262p02360 at 258.877 kb on - strand, within PGA1_262p02360 at 258.931 kb on - strand, within PGA1_262p02360 at 259.041 kb on - strand at 259.046 kb on - strand at 259.095 kb on - strand at 259.274 kb on + strand, within PGA1_262p02370 at 259.274 kb on + strand, within PGA1_262p02370 at 259.274 kb on + strand, within PGA1_262p02370 at 259.282 kb on - strand, within PGA1_262p02370 at 259.329 kb on + strand, within PGA1_262p02370 at 259.524 kb on - strand, within PGA1_262p02370 at 259.533 kb on + strand, within PGA1_262p02370 at 259.568 kb on - strand, within PGA1_262p02370 at 259.809 kb on - strand at 259.916 kb on + strand, within PGA1_262p02380 at 259.985 kb on + strand, within PGA1_262p02380 at 259.985 kb on + strand, within PGA1_262p02380 at 259.986 kb on - strand, within PGA1_262p02380 at 260.030 kb on + strand, within PGA1_262p02380 at 260.105 kb on - strand, within PGA1_262p02380 at 260.114 kb on - strand, within PGA1_262p02380 at 260.171 kb on - strand, within PGA1_262p02380 at 260.174 kb on + strand, within PGA1_262p02380 at 260.174 kb on + strand, within PGA1_262p02380 at 260.182 kb on - strand, within PGA1_262p02380 at 260.200 kb on + strand, within PGA1_262p02380 at 260.258 kb on + strand, within PGA1_262p02380 at 260.264 kb on - strand, within PGA1_262p02380 at 260.304 kb on - strand, within PGA1_262p02380 at 260.330 kb on + strand at 260.393 kb on + strand, within PGA1_262p02380 at 260.436 kb on + strand, within PGA1_262p02380 at 260.453 kb on + strand, within PGA1_262p02380 at 260.461 kb on - strand, within PGA1_262p02380 at 260.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 258,876 - PGA1_262p02360 0.78 -0.4 258,877 - PGA1_262p02360 0.78 +0.0 258,931 - PGA1_262p02360 0.85 +0.5 259,041 - +0.5 259,046 - -2.2 259,095 - -0.7 259,274 + PGA1_262p02370 0.29 +1.8 259,274 + PGA1_262p02370 0.29 -2.4 259,274 + PGA1_262p02370 0.29 +0.4 259,282 - PGA1_262p02370 0.30 +2.7 259,329 + PGA1_262p02370 0.36 -1.8 259,524 - PGA1_262p02370 0.62 +0.6 259,533 + PGA1_262p02370 0.63 -0.1 259,568 - PGA1_262p02370 0.68 -0.8 259,809 - +0.1 259,916 + PGA1_262p02380 0.14 +0.8 259,985 + PGA1_262p02380 0.23 +1.8 259,985 + PGA1_262p02380 0.23 +0.1 259,986 - PGA1_262p02380 0.23 +0.8 260,030 + PGA1_262p02380 0.29 -0.2 260,105 - PGA1_262p02380 0.38 +1.7 260,114 - PGA1_262p02380 0.40 +0.6 260,171 - PGA1_262p02380 0.47 -0.0 260,174 + PGA1_262p02380 0.47 +0.1 260,174 + PGA1_262p02380 0.47 +3.1 260,182 - PGA1_262p02380 0.48 -1.2 260,200 + PGA1_262p02380 0.51 +0.1 260,258 + PGA1_262p02380 0.58 +0.4 260,264 - PGA1_262p02380 0.59 +2.1 260,304 - PGA1_262p02380 0.64 +1.8 260,330 + +0.1 260,393 + PGA1_262p02380 0.75 +0.7 260,436 + PGA1_262p02380 0.81 +2.1 260,453 + PGA1_262p02380 0.83 +1.3 260,461 - PGA1_262p02380 0.84 -1.3 260,632 - -1.1
Or see this region's nucleotide sequence