Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02180 and PGA1_262p02190 are separated by 9 nucleotides PGA1_262p02190 and PGA1_262p02200 overlap by 7 nucleotides PGA1_262p02200 and PGA1_262p02210 are separated by 204 nucleotides
PGA1_262p02180: PGA1_262p02180 - molybdate-binding periplasmic protein ModA, at 235,681 to 236,496
_262p02180
PGA1_262p02190: PGA1_262p02190 - molybdenum transport system permease protein ModB, at 236,506 to 237,204
_262p02190
PGA1_262p02200: PGA1_262p02200 - molybdenum import ATP-binding protein ModC, at 237,198 to 238,289
_262p02200
PGA1_262p02210: PGA1_262p02210 - FAD dependent oxidoreductase, at 238,494 to 239,795
_262p02210
Position (kb) 237
238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 236.306 kb on + strand, within PGA1_262p02180 at 236.314 kb on - strand, within PGA1_262p02180 at 236.324 kb on + strand, within PGA1_262p02180 at 236.465 kb on - strand at 236.481 kb on - strand at 236.487 kb on + strand at 236.723 kb on + strand, within PGA1_262p02190 at 236.731 kb on - strand, within PGA1_262p02190 at 237.170 kb on + strand at 237.383 kb on + strand, within PGA1_262p02200 at 237.460 kb on - strand, within PGA1_262p02200 at 237.556 kb on + strand, within PGA1_262p02200 at 237.586 kb on - strand, within PGA1_262p02200 at 237.590 kb on + strand, within PGA1_262p02200 at 237.635 kb on + strand, within PGA1_262p02200 at 237.643 kb on - strand, within PGA1_262p02200 at 237.913 kb on + strand, within PGA1_262p02200 at 237.921 kb on - strand, within PGA1_262p02200 at 238.206 kb on - strand at 238.388 kb on + strand at 238.404 kb on + strand at 238.412 kb on - strand at 238.481 kb on + strand at 238.675 kb on + strand, within PGA1_262p02210 at 238.722 kb on + strand, within PGA1_262p02210 at 238.766 kb on + strand, within PGA1_262p02210 at 239.150 kb on + strand, within PGA1_262p02210 at 239.168 kb on - strand, within PGA1_262p02210
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 236,306 + PGA1_262p02180 0.77 -2.1 236,314 - PGA1_262p02180 0.78 -0.6 236,324 + PGA1_262p02180 0.79 -1.9 236,465 - -2.1 236,481 - +0.7 236,487 + -1.1 236,723 + PGA1_262p02190 0.31 -0.8 236,731 - PGA1_262p02190 0.32 -0.3 237,170 + +1.3 237,383 + PGA1_262p02200 0.17 +1.1 237,460 - PGA1_262p02200 0.24 -0.6 237,556 + PGA1_262p02200 0.33 -3.1 237,586 - PGA1_262p02200 0.36 -0.5 237,590 + PGA1_262p02200 0.36 -2.7 237,635 + PGA1_262p02200 0.40 -2.7 237,643 - PGA1_262p02200 0.41 +1.4 237,913 + PGA1_262p02200 0.65 -1.6 237,921 - PGA1_262p02200 0.66 -1.9 238,206 - -1.3 238,388 + +1.3 238,404 + +1.1 238,412 - -1.1 238,481 + -0.5 238,675 + PGA1_262p02210 0.14 -0.6 238,722 + PGA1_262p02210 0.18 -0.9 238,766 + PGA1_262p02210 0.21 +1.4 239,150 + PGA1_262p02210 0.50 +0.1 239,168 - PGA1_262p02210 0.52 +0.6
Or see this region's nucleotide sequence