Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01670 and PGA1_262p01680 are separated by 57 nucleotides PGA1_262p01680 and PGA1_262p01690 are separated by 107 nucleotides PGA1_262p01690 and PGA1_262p01700 are separated by 22 nucleotides
PGA1_262p01670: PGA1_262p01670 - putative transcriptional regulator, LysR family, at 182,605 to 183,483
_262p01670
PGA1_262p01680: PGA1_262p01680 - hypothetical protein, at 183,541 to 184,329
_262p01680
PGA1_262p01690: PGA1_262p01690 - peptidase S15, at 184,437 to 186,416
_262p01690
PGA1_262p01700: PGA1_262p01700 - putative ABC transporter, solute-binding protein, at 186,439 to 187,989
_262p01700
Position (kb) 184
185
186
187 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 183.609 kb on + strand at 183.617 kb on - strand at 183.734 kb on - strand, within PGA1_262p01680 at 183.734 kb on - strand, within PGA1_262p01680 at 183.762 kb on + strand, within PGA1_262p01680 at 183.775 kb on - strand, within PGA1_262p01680 at 183.775 kb on - strand, within PGA1_262p01680 at 183.803 kb on - strand, within PGA1_262p01680 at 183.960 kb on + strand, within PGA1_262p01680 at 183.960 kb on + strand, within PGA1_262p01680 at 183.968 kb on - strand, within PGA1_262p01680 at 184.074 kb on + strand, within PGA1_262p01680 at 184.270 kb on + strand at 184.570 kb on - strand at 184.722 kb on + strand, within PGA1_262p01690 at 184.832 kb on + strand, within PGA1_262p01690 at 184.840 kb on - strand, within PGA1_262p01690 at 184.840 kb on - strand, within PGA1_262p01690 at 184.933 kb on + strand, within PGA1_262p01690 at 184.940 kb on - strand, within PGA1_262p01690 at 184.940 kb on - strand, within PGA1_262p01690 at 184.945 kb on - strand, within PGA1_262p01690 at 185.003 kb on - strand, within PGA1_262p01690 at 185.016 kb on + strand, within PGA1_262p01690 at 185.032 kb on - strand, within PGA1_262p01690 at 185.041 kb on + strand, within PGA1_262p01690 at 185.158 kb on + strand, within PGA1_262p01690 at 185.201 kb on - strand, within PGA1_262p01690 at 185.201 kb on - strand, within PGA1_262p01690 at 185.219 kb on + strand, within PGA1_262p01690 at 185.238 kb on - strand, within PGA1_262p01690 at 185.256 kb on - strand, within PGA1_262p01690 at 185.284 kb on - strand, within PGA1_262p01690 at 185.309 kb on + strand, within PGA1_262p01690 at 185.309 kb on + strand, within PGA1_262p01690 at 185.398 kb on + strand, within PGA1_262p01690 at 185.406 kb on - strand, within PGA1_262p01690 at 185.501 kb on + strand, within PGA1_262p01690 at 185.528 kb on - strand, within PGA1_262p01690 at 185.663 kb on - strand, within PGA1_262p01690 at 185.687 kb on - strand, within PGA1_262p01690 at 185.708 kb on + strand, within PGA1_262p01690 at 185.791 kb on + strand, within PGA1_262p01690 at 185.799 kb on - strand, within PGA1_262p01690 at 185.838 kb on - strand, within PGA1_262p01690 at 185.840 kb on + strand, within PGA1_262p01690 at 185.899 kb on - strand, within PGA1_262p01690 at 186.073 kb on - strand, within PGA1_262p01690 at 186.168 kb on - strand, within PGA1_262p01690 at 186.168 kb on - strand, within PGA1_262p01690 at 186.168 kb on - strand, within PGA1_262p01690 at 186.210 kb on - strand, within PGA1_262p01690 at 186.220 kb on - strand at 186.220 kb on - strand at 186.436 kb on - strand at 186.513 kb on - strand at 186.536 kb on - strand at 186.606 kb on - strand, within PGA1_262p01700 at 186.725 kb on - strand, within PGA1_262p01700 at 186.754 kb on + strand, within PGA1_262p01700 at 186.774 kb on - strand, within PGA1_262p01700 at 186.883 kb on - strand, within PGA1_262p01700 at 186.902 kb on + strand, within PGA1_262p01700 at 186.941 kb on + strand, within PGA1_262p01700 at 187.195 kb on - strand, within PGA1_262p01700
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 183,609 + +0.3 183,617 - +1.1 183,734 - PGA1_262p01680 0.24 -0.5 183,734 - PGA1_262p01680 0.24 +0.8 183,762 + PGA1_262p01680 0.28 -0.3 183,775 - PGA1_262p01680 0.30 +1.0 183,775 - PGA1_262p01680 0.30 +0.4 183,803 - PGA1_262p01680 0.33 +0.5 183,960 + PGA1_262p01680 0.53 -0.7 183,960 + PGA1_262p01680 0.53 -0.6 183,968 - PGA1_262p01680 0.54 -0.9 184,074 + PGA1_262p01680 0.68 +0.1 184,270 + -0.9 184,570 - -0.2 184,722 + PGA1_262p01690 0.14 -0.7 184,832 + PGA1_262p01690 0.20 +1.5 184,840 - PGA1_262p01690 0.20 +0.1 184,840 - PGA1_262p01690 0.20 -1.5 184,933 + PGA1_262p01690 0.25 -0.7 184,940 - PGA1_262p01690 0.25 +1.4 184,940 - PGA1_262p01690 0.25 +0.7 184,945 - PGA1_262p01690 0.26 -1.0 185,003 - PGA1_262p01690 0.29 +0.1 185,016 + PGA1_262p01690 0.29 -0.3 185,032 - PGA1_262p01690 0.30 +0.6 185,041 + PGA1_262p01690 0.31 -0.1 185,158 + PGA1_262p01690 0.36 -1.7 185,201 - PGA1_262p01690 0.39 -2.2 185,201 - PGA1_262p01690 0.39 -1.4 185,219 + PGA1_262p01690 0.39 +0.9 185,238 - PGA1_262p01690 0.40 -0.1 185,256 - PGA1_262p01690 0.41 -1.1 185,284 - PGA1_262p01690 0.43 +0.2 185,309 + PGA1_262p01690 0.44 -0.3 185,309 + PGA1_262p01690 0.44 +0.3 185,398 + PGA1_262p01690 0.49 -2.1 185,406 - PGA1_262p01690 0.49 +0.2 185,501 + PGA1_262p01690 0.54 -1.9 185,528 - PGA1_262p01690 0.55 +0.8 185,663 - PGA1_262p01690 0.62 -0.1 185,687 - PGA1_262p01690 0.63 -0.2 185,708 + PGA1_262p01690 0.64 -0.8 185,791 + PGA1_262p01690 0.68 +0.9 185,799 - PGA1_262p01690 0.69 -2.5 185,838 - PGA1_262p01690 0.71 +1.3 185,840 + PGA1_262p01690 0.71 -3.9 185,899 - PGA1_262p01690 0.74 -0.1 186,073 - PGA1_262p01690 0.83 -0.5 186,168 - PGA1_262p01690 0.87 -0.5 186,168 - PGA1_262p01690 0.87 -0.7 186,168 - PGA1_262p01690 0.87 -0.1 186,210 - PGA1_262p01690 0.90 -1.5 186,220 - -1.1 186,220 - +0.8 186,436 - -0.3 186,513 - +1.1 186,536 - +2.7 186,606 - PGA1_262p01700 0.11 -0.6 186,725 - PGA1_262p01700 0.18 +0.9 186,754 + PGA1_262p01700 0.20 +0.9 186,774 - PGA1_262p01700 0.22 -2.2 186,883 - PGA1_262p01700 0.29 +1.2 186,902 + PGA1_262p01700 0.30 -0.8 186,941 + PGA1_262p01700 0.32 -2.2 187,195 - PGA1_262p01700 0.49 +0.1
Or see this region's nucleotide sequence