Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01440 and PGA1_262p01450 are separated by 62 nucleotides PGA1_262p01450 and PGA1_262p01460 overlap by 1 nucleotides
PGA1_262p01440: PGA1_262p01440 - BCCT transporter, at 156,478 to 158,022
_262p01440
PGA1_262p01450: PGA1_262p01450 - putative membrane dipeptidase, at 158,085 to 159,077
_262p01450
PGA1_262p01460: PGA1_262p01460 - aldehyde dehydrogenase, at 159,077 to 160,570
_262p01460
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 157.093 kb on - strand, within PGA1_262p01440 at 157.215 kb on - strand, within PGA1_262p01440 at 157.344 kb on + strand, within PGA1_262p01440 at 157.464 kb on + strand, within PGA1_262p01440 at 157.469 kb on + strand, within PGA1_262p01440 at 157.469 kb on + strand, within PGA1_262p01440 at 157.535 kb on + strand, within PGA1_262p01440 at 157.762 kb on - strand, within PGA1_262p01440 at 157.831 kb on + strand, within PGA1_262p01440 at 157.928 kb on + strand at 157.928 kb on + strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.936 kb on - strand at 157.987 kb on + strand at 157.997 kb on + strand at 158.055 kb on + strand at 158.055 kb on + strand at 158.088 kb on + strand at 158.215 kb on - strand, within PGA1_262p01450 at 158.345 kb on + strand, within PGA1_262p01450 at 158.525 kb on + strand, within PGA1_262p01450 at 158.533 kb on - strand, within PGA1_262p01450 at 158.533 kb on - strand, within PGA1_262p01450 at 158.555 kb on + strand, within PGA1_262p01450 at 158.607 kb on - strand, within PGA1_262p01450 at 158.786 kb on + strand, within PGA1_262p01450 at 158.786 kb on + strand, within PGA1_262p01450 at 158.895 kb on - strand, within PGA1_262p01450 at 158.945 kb on - strand, within PGA1_262p01450 at 159.095 kb on + strand at 159.117 kb on + strand at 159.143 kb on - strand at 159.154 kb on + strand at 159.154 kb on + strand at 159.156 kb on + strand at 159.546 kb on + strand, within PGA1_262p01460 at 159.566 kb on + strand, within PGA1_262p01460 at 159.604 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.927 kb on - strand, within PGA1_262p01460 at 159.936 kb on + strand, within PGA1_262p01460 at 159.989 kb on - strand, within PGA1_262p01460
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 157,093 - PGA1_262p01440 0.40 +0.3 157,215 - PGA1_262p01440 0.48 -1.9 157,344 + PGA1_262p01440 0.56 -1.5 157,464 + PGA1_262p01440 0.64 +1.3 157,469 + PGA1_262p01440 0.64 +0.6 157,469 + PGA1_262p01440 0.64 -2.9 157,535 + PGA1_262p01440 0.68 +0.4 157,762 - PGA1_262p01440 0.83 -0.3 157,831 + PGA1_262p01440 0.88 -0.2 157,928 + -0.1 157,928 + +0.6 157,936 - -0.4 157,936 - +0.1 157,936 - +0.9 157,936 - -1.1 157,987 + +0.7 157,997 + +1.1 158,055 + -0.9 158,055 + +0.6 158,088 + -0.1 158,215 - PGA1_262p01450 0.13 +1.5 158,345 + PGA1_262p01450 0.26 -2.5 158,525 + PGA1_262p01450 0.44 +0.1 158,533 - PGA1_262p01450 0.45 +0.4 158,533 - PGA1_262p01450 0.45 +0.6 158,555 + PGA1_262p01450 0.47 +2.1 158,607 - PGA1_262p01450 0.53 -1.9 158,786 + PGA1_262p01450 0.71 -1.5 158,786 + PGA1_262p01450 0.71 +1.4 158,895 - PGA1_262p01450 0.82 +0.1 158,945 - PGA1_262p01450 0.87 +1.3 159,095 + +1.0 159,117 + +1.3 159,143 - -0.1 159,154 + -0.1 159,154 + +0.9 159,156 + +0.5 159,546 + PGA1_262p01460 0.31 -0.2 159,566 + PGA1_262p01460 0.33 +0.9 159,604 + PGA1_262p01460 0.35 +0.1 159,871 + PGA1_262p01460 0.53 -0.6 159,871 + PGA1_262p01460 0.53 +0.2 159,871 + PGA1_262p01460 0.53 +0.6 159,927 - PGA1_262p01460 0.57 -0.2 159,936 + PGA1_262p01460 0.57 -0.1 159,989 - PGA1_262p01460 0.61 +0.1
Or see this region's nucleotide sequence