Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00190

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00170 and PGA1_262p00180 are separated by 88 nucleotidesPGA1_262p00180 and PGA1_262p00190 are separated by 45 nucleotidesPGA1_262p00190 and PGA1_262p00200 are separated by 68 nucleotides PGA1_262p00170: PGA1_262p00170 - Predicted branched-chain amino acid permease (azaleucine resistance), at 21,054 to 21,770 _262p00170 PGA1_262p00180: PGA1_262p00180 - transcriptional regulator, AsnC family, at 21,859 to 22,332 _262p00180 PGA1_262p00190: PGA1_262p00190 - putative transporter, MFS family, at 22,378 to 23,694 _262p00190 PGA1_262p00200: PGA1_262p00200 - transcriptional regulator, LysR family, at 23,763 to 24,689 _262p00200 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1 2at 21.378 kb on - strand, within PGA1_262p00170at 21.413 kb on - strand, within PGA1_262p00170at 21.420 kb on - strand, within PGA1_262p00170at 21.531 kb on + strand, within PGA1_262p00170at 21.546 kb on + strand, within PGA1_262p00170at 21.687 kb on - strand, within PGA1_262p00170at 21.786 kb on + strandat 21.914 kb on - strand, within PGA1_262p00180at 21.914 kb on - strand, within PGA1_262p00180at 21.939 kb on - strand, within PGA1_262p00180at 21.968 kb on - strand, within PGA1_262p00180at 21.981 kb on - strand, within PGA1_262p00180at 21.981 kb on - strand, within PGA1_262p00180at 22.001 kb on + strand, within PGA1_262p00180at 22.036 kb on + strand, within PGA1_262p00180at 22.052 kb on + strand, within PGA1_262p00180at 22.052 kb on + strand, within PGA1_262p00180at 22.052 kb on + strand, within PGA1_262p00180at 22.052 kb on + strand, within PGA1_262p00180at 22.052 kb on + strand, within PGA1_262p00180at 22.060 kb on - strand, within PGA1_262p00180at 22.060 kb on - strand, within PGA1_262p00180at 22.060 kb on - strand, within PGA1_262p00180at 22.060 kb on - strand, within PGA1_262p00180at 22.100 kb on - strand, within PGA1_262p00180at 22.100 kb on - strand, within PGA1_262p00180at 22.200 kb on - strand, within PGA1_262p00180at 22.307 kb on - strandat 22.362 kb on + strandat 22.397 kb on - strandat 22.434 kb on + strandat 22.628 kb on + strand, within PGA1_262p00190at 22.659 kb on + strand, within PGA1_262p00190at 22.727 kb on + strand, within PGA1_262p00190at 22.727 kb on + strand, within PGA1_262p00190at 22.727 kb on + strand, within PGA1_262p00190at 22.741 kb on - strand, within PGA1_262p00190at 23.009 kb on - strand, within PGA1_262p00190at 23.052 kb on + strand, within PGA1_262p00190at 23.052 kb on + strand, within PGA1_262p00190at 23.052 kb on + strand, within PGA1_262p00190at 23.052 kb on + strand, within PGA1_262p00190at 23.052 kb on + strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.060 kb on - strand, within PGA1_262p00190at 23.073 kb on + strand, within PGA1_262p00190at 23.081 kb on - strand, within PGA1_262p00190at 23.218 kb on + strand, within PGA1_262p00190at 23.519 kb on + strand, within PGA1_262p00190at 23.632 kb on - strandat 23.649 kb on - strandat 23.649 kb on - strandat 23.728 kb on - strandat 23.762 kb on - strandat 23.804 kb on + strandat 23.838 kb on + strandat 23.838 kb on + strandat 23.855 kb on + strandat 24.111 kb on - strand, within PGA1_262p00200at 24.131 kb on + strand, within PGA1_262p00200at 24.139 kb on - strand, within PGA1_262p00200at 24.154 kb on - strand, within PGA1_262p00200at 24.309 kb on - strand, within PGA1_262p00200at 24.374 kb on + strand, within PGA1_262p00200at 24.489 kb on - strand, within PGA1_262p00200at 24.491 kb on + strand, within PGA1_262p00200at 24.562 kb on - strand, within PGA1_262p00200at 24.569 kb on + strand, within PGA1_262p00200at 24.577 kb on - strand, within PGA1_262p00200at 24.577 kb on - strand, within PGA1_262p00200at 24.577 kb on - strand, within PGA1_262p00200at 24.577 kb on - strand, within PGA1_262p00200at 24.613 kb on - strandat 24.642 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
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21,378 - PGA1_262p00170 0.45 +0.6
21,413 - PGA1_262p00170 0.50 -0.6
21,420 - PGA1_262p00170 0.51 +0.2
21,531 + PGA1_262p00170 0.67 +0.1
21,546 + PGA1_262p00170 0.69 -0.9
21,687 - PGA1_262p00170 0.88 -1.2
21,786 + -1.3
21,914 - PGA1_262p00180 0.12 +1.4
21,914 - PGA1_262p00180 0.12 +0.7
21,939 - PGA1_262p00180 0.17 -0.5
21,968 - PGA1_262p00180 0.23 +0.6
21,981 - PGA1_262p00180 0.26 +0.6
21,981 - PGA1_262p00180 0.26 +0.5
22,001 + PGA1_262p00180 0.30 +1.1
22,036 + PGA1_262p00180 0.37 +0.3
22,052 + PGA1_262p00180 0.41 -1.0
22,052 + PGA1_262p00180 0.41 +0.4
22,052 + PGA1_262p00180 0.41 -0.1
22,052 + PGA1_262p00180 0.41 +0.7
22,052 + PGA1_262p00180 0.41 +0.8
22,060 - PGA1_262p00180 0.42 +0.5
22,060 - PGA1_262p00180 0.42 +0.8
22,060 - PGA1_262p00180 0.42 +0.3
22,060 - PGA1_262p00180 0.42 -1.2
22,100 - PGA1_262p00180 0.51 +1.1
22,100 - PGA1_262p00180 0.51 +0.3
22,200 - PGA1_262p00180 0.72 -0.0
22,307 - +0.4
22,362 + +1.1
22,397 - -1.6
22,434 + +0.2
22,628 + PGA1_262p00190 0.19 -0.9
22,659 + PGA1_262p00190 0.21 +0.4
22,727 + PGA1_262p00190 0.26 -1.8
22,727 + PGA1_262p00190 0.26 +0.1
22,727 + PGA1_262p00190 0.26 +0.2
22,741 - PGA1_262p00190 0.28 -1.9
23,009 - PGA1_262p00190 0.48 +0.4
23,052 + PGA1_262p00190 0.51 -1.9
23,052 + PGA1_262p00190 0.51 -0.9
23,052 + PGA1_262p00190 0.51 -1.3
23,052 + PGA1_262p00190 0.51 -0.5
23,052 + PGA1_262p00190 0.51 -1.7
23,060 - PGA1_262p00190 0.52 -0.7
23,060 - PGA1_262p00190 0.52 -0.5
23,060 - PGA1_262p00190 0.52 -0.3
23,060 - PGA1_262p00190 0.52 +0.1
23,060 - PGA1_262p00190 0.52 +0.7
23,060 - PGA1_262p00190 0.52 -0.6
23,060 - PGA1_262p00190 0.52 -0.9
23,060 - PGA1_262p00190 0.52 -0.6
23,073 + PGA1_262p00190 0.53 +0.0
23,081 - PGA1_262p00190 0.53 -0.4
23,218 + PGA1_262p00190 0.64 +0.1
23,519 + PGA1_262p00190 0.87 -1.5
23,632 - +0.3
23,649 - +1.1
23,649 - -2.0
23,728 - -0.3
23,762 - +0.8
23,804 + -0.3
23,838 + +1.7
23,838 + +1.1
23,855 + +1.0
24,111 - PGA1_262p00200 0.38 +0.8
24,131 + PGA1_262p00200 0.40 +1.9
24,139 - PGA1_262p00200 0.41 -1.9
24,154 - PGA1_262p00200 0.42 -0.9
24,309 - PGA1_262p00200 0.59 +0.1
24,374 + PGA1_262p00200 0.66 -1.6
24,489 - PGA1_262p00200 0.78 +1.0
24,491 + PGA1_262p00200 0.79 +1.1
24,562 - PGA1_262p00200 0.86 -0.8
24,569 + PGA1_262p00200 0.87 -1.0
24,577 - PGA1_262p00200 0.88 -0.5
24,577 - PGA1_262p00200 0.88 -0.2
24,577 - PGA1_262p00200 0.88 +0.8
24,577 - PGA1_262p00200 0.88 +1.9
24,613 - -1.5
24,642 + -1.9

Or see this region's nucleotide sequence