Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00170 and PGA1_262p00180 are separated by 88 nucleotides PGA1_262p00180 and PGA1_262p00190 are separated by 45 nucleotides PGA1_262p00190 and PGA1_262p00200 are separated by 68 nucleotides
PGA1_262p00170: PGA1_262p00170 - Predicted branched-chain amino acid permease (azaleucine resistance), at 21,054 to 21,770
_262p00170
PGA1_262p00180: PGA1_262p00180 - transcriptional regulator, AsnC family, at 21,859 to 22,332
_262p00180
PGA1_262p00190: PGA1_262p00190 - putative transporter, MFS family, at 22,378 to 23,694
_262p00190
PGA1_262p00200: PGA1_262p00200 - transcriptional regulator, LysR family, at 23,763 to 24,689
_262p00200
Position (kb)
22
23
24 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 21.378 kb on - strand, within PGA1_262p00170 at 21.413 kb on - strand, within PGA1_262p00170 at 21.420 kb on - strand, within PGA1_262p00170 at 21.531 kb on + strand, within PGA1_262p00170 at 21.546 kb on + strand, within PGA1_262p00170 at 21.687 kb on - strand, within PGA1_262p00170 at 21.786 kb on + strand at 21.914 kb on - strand, within PGA1_262p00180 at 21.914 kb on - strand, within PGA1_262p00180 at 21.939 kb on - strand, within PGA1_262p00180 at 21.968 kb on - strand, within PGA1_262p00180 at 21.981 kb on - strand, within PGA1_262p00180 at 21.981 kb on - strand, within PGA1_262p00180 at 22.001 kb on + strand, within PGA1_262p00180 at 22.036 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180 at 22.052 kb on + strand, within PGA1_262p00180 at 22.060 kb on - strand, within PGA1_262p00180 at 22.060 kb on - strand, within PGA1_262p00180 at 22.060 kb on - strand, within PGA1_262p00180 at 22.060 kb on - strand, within PGA1_262p00180 at 22.100 kb on - strand, within PGA1_262p00180 at 22.100 kb on - strand, within PGA1_262p00180 at 22.200 kb on - strand, within PGA1_262p00180 at 22.307 kb on - strand at 22.362 kb on + strand at 22.397 kb on - strand at 22.434 kb on + strand at 22.628 kb on + strand, within PGA1_262p00190 at 22.659 kb on + strand, within PGA1_262p00190 at 22.727 kb on + strand, within PGA1_262p00190 at 22.727 kb on + strand, within PGA1_262p00190 at 22.727 kb on + strand, within PGA1_262p00190 at 22.741 kb on - strand, within PGA1_262p00190 at 23.009 kb on - strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.052 kb on + strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.060 kb on - strand, within PGA1_262p00190 at 23.073 kb on + strand, within PGA1_262p00190 at 23.081 kb on - strand, within PGA1_262p00190 at 23.218 kb on + strand, within PGA1_262p00190 at 23.519 kb on + strand, within PGA1_262p00190 at 23.632 kb on - strand at 23.649 kb on - strand at 23.649 kb on - strand at 23.728 kb on - strand at 23.762 kb on - strand at 23.804 kb on + strand at 23.838 kb on + strand at 23.838 kb on + strand at 23.855 kb on + strand at 24.111 kb on - strand, within PGA1_262p00200 at 24.131 kb on + strand, within PGA1_262p00200 at 24.139 kb on - strand, within PGA1_262p00200 at 24.154 kb on - strand, within PGA1_262p00200 at 24.309 kb on - strand, within PGA1_262p00200 at 24.374 kb on + strand, within PGA1_262p00200 at 24.489 kb on - strand, within PGA1_262p00200 at 24.491 kb on + strand, within PGA1_262p00200 at 24.562 kb on - strand, within PGA1_262p00200 at 24.569 kb on + strand, within PGA1_262p00200 at 24.577 kb on - strand, within PGA1_262p00200 at 24.577 kb on - strand, within PGA1_262p00200 at 24.577 kb on - strand, within PGA1_262p00200 at 24.577 kb on - strand, within PGA1_262p00200 at 24.613 kb on - strand at 24.642 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 21,378 - PGA1_262p00170 0.45 +0.6 21,413 - PGA1_262p00170 0.50 -0.6 21,420 - PGA1_262p00170 0.51 +0.2 21,531 + PGA1_262p00170 0.67 +0.1 21,546 + PGA1_262p00170 0.69 -0.9 21,687 - PGA1_262p00170 0.88 -1.2 21,786 + -1.3 21,914 - PGA1_262p00180 0.12 +1.4 21,914 - PGA1_262p00180 0.12 +0.7 21,939 - PGA1_262p00180 0.17 -0.5 21,968 - PGA1_262p00180 0.23 +0.6 21,981 - PGA1_262p00180 0.26 +0.6 21,981 - PGA1_262p00180 0.26 +0.5 22,001 + PGA1_262p00180 0.30 +1.1 22,036 + PGA1_262p00180 0.37 +0.3 22,052 + PGA1_262p00180 0.41 -1.0 22,052 + PGA1_262p00180 0.41 +0.4 22,052 + PGA1_262p00180 0.41 -0.1 22,052 + PGA1_262p00180 0.41 +0.7 22,052 + PGA1_262p00180 0.41 +0.8 22,060 - PGA1_262p00180 0.42 +0.5 22,060 - PGA1_262p00180 0.42 +0.8 22,060 - PGA1_262p00180 0.42 +0.3 22,060 - PGA1_262p00180 0.42 -1.2 22,100 - PGA1_262p00180 0.51 +1.1 22,100 - PGA1_262p00180 0.51 +0.3 22,200 - PGA1_262p00180 0.72 -0.0 22,307 - +0.4 22,362 + +1.1 22,397 - -1.6 22,434 + +0.2 22,628 + PGA1_262p00190 0.19 -0.9 22,659 + PGA1_262p00190 0.21 +0.4 22,727 + PGA1_262p00190 0.26 -1.8 22,727 + PGA1_262p00190 0.26 +0.1 22,727 + PGA1_262p00190 0.26 +0.2 22,741 - PGA1_262p00190 0.28 -1.9 23,009 - PGA1_262p00190 0.48 +0.4 23,052 + PGA1_262p00190 0.51 -1.9 23,052 + PGA1_262p00190 0.51 -0.9 23,052 + PGA1_262p00190 0.51 -1.3 23,052 + PGA1_262p00190 0.51 -0.5 23,052 + PGA1_262p00190 0.51 -1.7 23,060 - PGA1_262p00190 0.52 -0.7 23,060 - PGA1_262p00190 0.52 -0.5 23,060 - PGA1_262p00190 0.52 -0.3 23,060 - PGA1_262p00190 0.52 +0.1 23,060 - PGA1_262p00190 0.52 +0.7 23,060 - PGA1_262p00190 0.52 -0.6 23,060 - PGA1_262p00190 0.52 -0.9 23,060 - PGA1_262p00190 0.52 -0.6 23,073 + PGA1_262p00190 0.53 +0.0 23,081 - PGA1_262p00190 0.53 -0.4 23,218 + PGA1_262p00190 0.64 +0.1 23,519 + PGA1_262p00190 0.87 -1.5 23,632 - +0.3 23,649 - +1.1 23,649 - -2.0 23,728 - -0.3 23,762 - +0.8 23,804 + -0.3 23,838 + +1.7 23,838 + +1.1 23,855 + +1.0 24,111 - PGA1_262p00200 0.38 +0.8 24,131 + PGA1_262p00200 0.40 +1.9 24,139 - PGA1_262p00200 0.41 -1.9 24,154 - PGA1_262p00200 0.42 -0.9 24,309 - PGA1_262p00200 0.59 +0.1 24,374 + PGA1_262p00200 0.66 -1.6 24,489 - PGA1_262p00200 0.78 +1.0 24,491 + PGA1_262p00200 0.79 +1.1 24,562 - PGA1_262p00200 0.86 -0.8 24,569 + PGA1_262p00200 0.87 -1.0 24,577 - PGA1_262p00200 0.88 -0.5 24,577 - PGA1_262p00200 0.88 -0.2 24,577 - PGA1_262p00200 0.88 +0.8 24,577 - PGA1_262p00200 0.88 +1.9 24,613 - -1.5 24,642 + -1.9
Or see this region's nucleotide sequence