Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03630

Experiment: m.b. D-Cycloserine 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03610 and PGA1_c03620 are separated by 12 nucleotidesPGA1_c03620 and PGA1_c03630 are separated by 2 nucleotidesPGA1_c03630 and PGA1_c03640 are separated by 337 nucleotidesPGA1_c03640 and PGA1_c03650 are separated by 104 nucleotides PGA1_c03610: PGA1_c03610 - succinyl-CoA ligase [ADP-forming] subunit alpha, at 348,988 to 349,872 _c03610 PGA1_c03620: PGA1_c03620 - hypothetical protein, at 349,885 to 350,238 _c03620 PGA1_c03630: PGA1_c03630 - succinyl-CoA ligase [ADP-forming] subunit beta, at 350,241 to 351,434 _c03630 PGA1_c03640: PGA1_c03640 - Predicted ATPase, at 351,772 to 352,320 _c03640 PGA1_c03650: PGA1_c03650 - malate dehydrogenase Mdh, at 352,425 to 353,387 _c03650 Position (kb) 350 351 352Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 349.977 kb on - strand, within PGA1_c03620at 350.050 kb on - strand, within PGA1_c03620at 350.050 kb on - strand, within PGA1_c03620at 350.050 kb on - strand, within PGA1_c03620at 350.050 kb on - strand, within PGA1_c03620at 350.050 kb on - strand, within PGA1_c03620at 350.050 kb on - strand, within PGA1_c03620at 350.050 kb on - strand, within PGA1_c03620at 350.075 kb on - strand, within PGA1_c03620at 350.075 kb on - strand, within PGA1_c03620at 350.094 kb on - strand, within PGA1_c03620at 350.094 kb on - strand, within PGA1_c03620at 350.094 kb on - strand, within PGA1_c03620at 350.094 kb on - strand, within PGA1_c03620at 350.094 kb on - strand, within PGA1_c03620at 350.149 kb on - strand, within PGA1_c03620at 350.180 kb on - strand, within PGA1_c03620at 350.214 kb on - strandat 350.246 kb on - strandat 350.246 kb on - strandat 350.246 kb on - strandat 351.635 kb on - strandat 351.635 kb on - strandat 351.638 kb on + strandat 351.638 kb on + strandat 351.638 kb on + strandat 351.638 kb on + strandat 351.638 kb on + strandat 351.638 kb on + strandat 351.638 kb on + strandat 351.646 kb on - strandat 351.646 kb on - strandat 351.646 kb on - strandat 351.646 kb on - strandat 351.646 kb on - strandat 351.646 kb on - strandat 351.646 kb on - strandat 351.648 kb on + strandat 351.672 kb on - strandat 351.697 kb on - strandat 351.704 kb on + strandat 351.746 kb on + strandat 351.754 kb on - strandat 351.756 kb on + strandat 351.764 kb on - strandat 351.783 kb on + strandat 351.791 kb on - strandat 351.791 kb on - strandat 351.860 kb on - strand, within PGA1_c03640at 351.882 kb on - strand, within PGA1_c03640at 351.936 kb on - strand, within PGA1_c03640at 351.973 kb on + strand, within PGA1_c03640at 351.988 kb on + strand, within PGA1_c03640at 351.996 kb on - strand, within PGA1_c03640at 351.999 kb on + strand, within PGA1_c03640at 352.006 kb on + strand, within PGA1_c03640at 352.094 kb on + strand, within PGA1_c03640at 352.094 kb on + strand, within PGA1_c03640at 352.094 kb on + strand, within PGA1_c03640at 352.094 kb on + strand, within PGA1_c03640at 352.094 kb on + strand, within PGA1_c03640at 352.094 kb on + strand, within PGA1_c03640at 352.102 kb on - strand, within PGA1_c03640at 352.115 kb on + strand, within PGA1_c03640at 352.171 kb on - strand, within PGA1_c03640at 352.184 kb on + strand, within PGA1_c03640at 352.184 kb on + strand, within PGA1_c03640at 352.192 kb on - strand, within PGA1_c03640at 352.203 kb on + strand, within PGA1_c03640at 352.204 kb on + strand, within PGA1_c03640at 352.208 kb on + strand, within PGA1_c03640at 352.266 kb on + strandat 352.313 kb on - strandat 352.327 kb on + strandat 352.375 kb on - strandat 352.385 kb on + strandat 352.419 kb on - strandat 352.419 kb on - strandat 352.419 kb on - strandat 352.419 kb on - strandat 352.424 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml
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349,977 - PGA1_c03620 0.26 -1.6
350,050 - PGA1_c03620 0.47 +1.8
350,050 - PGA1_c03620 0.47 +0.7
350,050 - PGA1_c03620 0.47 +1.7
350,050 - PGA1_c03620 0.47 +2.4
350,050 - PGA1_c03620 0.47 +1.0
350,050 - PGA1_c03620 0.47 +0.8
350,050 - PGA1_c03620 0.47 +0.1
350,075 - PGA1_c03620 0.54 +0.0
350,075 - PGA1_c03620 0.54 -0.4
350,094 - PGA1_c03620 0.59 +2.1
350,094 - PGA1_c03620 0.59 +0.9
350,094 - PGA1_c03620 0.59 +0.5
350,094 - PGA1_c03620 0.59 +0.2
350,094 - PGA1_c03620 0.59 +2.0
350,149 - PGA1_c03620 0.75 +0.2
350,180 - PGA1_c03620 0.83 +1.8
350,214 - -0.2
350,246 - +3.1
350,246 - +0.9
350,246 - +1.6
351,635 - +2.1
351,635 - -0.9
351,638 + -1.8
351,638 + -0.6
351,638 + -1.1
351,638 + -3.1
351,638 + -1.0
351,638 + +0.2
351,638 + +1.7
351,646 - -0.6
351,646 - -1.0
351,646 - -0.6
351,646 - +0.7
351,646 - +1.4
351,646 - +0.6
351,646 - -0.8
351,648 + +0.1
351,672 - -0.4
351,697 - +0.1
351,704 + +0.8
351,746 + +1.5
351,754 - +0.7
351,756 + -0.2
351,764 - -1.5
351,783 + -1.5
351,791 - -0.2
351,791 - +0.5
351,860 - PGA1_c03640 0.16 -1.8
351,882 - PGA1_c03640 0.20 -0.7
351,936 - PGA1_c03640 0.30 -0.2
351,973 + PGA1_c03640 0.37 +0.1
351,988 + PGA1_c03640 0.39 -0.0
351,996 - PGA1_c03640 0.41 +0.6
351,999 + PGA1_c03640 0.41 +0.5
352,006 + PGA1_c03640 0.43 -0.0
352,094 + PGA1_c03640 0.59 +0.9
352,094 + PGA1_c03640 0.59 -2.4
352,094 + PGA1_c03640 0.59 -2.4
352,094 + PGA1_c03640 0.59 +1.4
352,094 + PGA1_c03640 0.59 +2.0
352,094 + PGA1_c03640 0.59 -0.3
352,102 - PGA1_c03640 0.60 +1.1
352,115 + PGA1_c03640 0.62 +1.4
352,171 - PGA1_c03640 0.73 +0.2
352,184 + PGA1_c03640 0.75 +2.0
352,184 + PGA1_c03640 0.75 -2.2
352,192 - PGA1_c03640 0.77 -0.3
352,203 + PGA1_c03640 0.79 -2.0
352,204 + PGA1_c03640 0.79 -0.2
352,208 + PGA1_c03640 0.79 +0.1
352,266 + +0.2
352,313 - -1.8
352,327 + -1.5
352,375 - +0.8
352,385 + +2.1
352,419 - -1.3
352,419 - -0.2
352,419 - +0.9
352,419 - -1.2
352,424 - -0.6

Or see this region's nucleotide sequence