Experiment: m.b. D-Cycloserine 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c33960 and PGA1_c33970 are separated by 43 nucleotides PGA1_c33970 and PGA1_c33980 are separated by 159 nucleotides PGA1_c33980 and PGA1_c33990 are separated by 18 nucleotides
PGA1_c33960: PGA1_c33960 - MiaB-like tRNA modifying enzyme, at 3,560,029 to 3,561,294
_c33960
PGA1_c33970: PGA1_c33970 - putative chloramphenicol phosphotransferase-like protein, at 3,561,338 to 3,561,859
_c33970
PGA1_c33980: PGA1_c33980 - cytochrome c1, at 3,562,019 to 3,562,810
_c33980
PGA1_c33990: PGA1_c33990 - cytochrome b, at 3,562,829 to 3,564,163
_c33990
Position (kb)
3561
3562 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3560.482 kb on - strand, within PGA1_c33960 at 3560.482 kb on - strand, within PGA1_c33960 at 3560.531 kb on + strand, within PGA1_c33960 at 3560.685 kb on + strand, within PGA1_c33960 at 3560.764 kb on + strand, within PGA1_c33960 at 3560.848 kb on - strand, within PGA1_c33960 at 3560.984 kb on - strand, within PGA1_c33960 at 3561.020 kb on - strand, within PGA1_c33960 at 3561.032 kb on - strand, within PGA1_c33960 at 3561.038 kb on - strand, within PGA1_c33960 at 3561.068 kb on - strand, within PGA1_c33960 at 3561.155 kb on - strand, within PGA1_c33960 at 3561.155 kb on - strand, within PGA1_c33960 at 3561.155 kb on - strand, within PGA1_c33960 at 3561.215 kb on + strand at 3561.290 kb on - strand at 3561.311 kb on + strand at 3561.333 kb on + strand at 3561.341 kb on + strand at 3561.441 kb on + strand, within PGA1_c33970 at 3561.529 kb on - strand, within PGA1_c33970 at 3561.566 kb on - strand, within PGA1_c33970 at 3561.608 kb on + strand, within PGA1_c33970 at 3561.618 kb on - strand, within PGA1_c33970 at 3561.699 kb on - strand, within PGA1_c33970 at 3561.699 kb on - strand, within PGA1_c33970 at 3561.741 kb on + strand, within PGA1_c33970 at 3561.747 kb on - strand, within PGA1_c33970 at 3561.751 kb on + strand, within PGA1_c33970 at 3561.817 kb on - strand at 3561.828 kb on + strand at 3561.828 kb on + strand at 3561.836 kb on - strand at 3561.836 kb on - strand at 3561.863 kb on - strand at 3561.865 kb on + strand at 3561.923 kb on + strand at 3561.931 kb on - strand at 3561.931 kb on - strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.973 kb on + strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.981 kb on - strand at 3561.998 kb on - strand at 3562.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.0625 mg/ml remove 3,560,482 - PGA1_c33960 0.36 +1.6 3,560,482 - PGA1_c33960 0.36 +0.3 3,560,531 + PGA1_c33960 0.40 -0.6 3,560,685 + PGA1_c33960 0.52 -1.8 3,560,764 + PGA1_c33960 0.58 +1.6 3,560,848 - PGA1_c33960 0.65 -1.5 3,560,984 - PGA1_c33960 0.75 +1.5 3,561,020 - PGA1_c33960 0.78 +0.6 3,561,032 - PGA1_c33960 0.79 -0.3 3,561,038 - PGA1_c33960 0.80 -0.4 3,561,068 - PGA1_c33960 0.82 +2.2 3,561,155 - PGA1_c33960 0.89 -2.0 3,561,155 - PGA1_c33960 0.89 +1.4 3,561,155 - PGA1_c33960 0.89 -0.6 3,561,215 + +0.5 3,561,290 - +0.0 3,561,311 + +0.1 3,561,333 + +0.6 3,561,341 + +0.7 3,561,441 + PGA1_c33970 0.20 -0.9 3,561,529 - PGA1_c33970 0.37 +0.3 3,561,566 - PGA1_c33970 0.44 -1.6 3,561,608 + PGA1_c33970 0.52 -0.5 3,561,618 - PGA1_c33970 0.54 -3.0 3,561,699 - PGA1_c33970 0.69 -1.3 3,561,699 - PGA1_c33970 0.69 -0.9 3,561,741 + PGA1_c33970 0.77 +1.0 3,561,747 - PGA1_c33970 0.78 +0.1 3,561,751 + PGA1_c33970 0.79 +0.2 3,561,817 - +1.0 3,561,828 + +1.3 3,561,828 + -1.0 3,561,836 - +0.4 3,561,836 - +0.6 3,561,863 - -1.3 3,561,865 + -2.7 3,561,923 + -0.5 3,561,931 - -1.8 3,561,931 - +0.8 3,561,973 + +0.5 3,561,973 + -0.6 3,561,973 + +0.4 3,561,973 + +0.4 3,561,973 + -0.6 3,561,973 + +0.5 3,561,973 + +0.9 3,561,973 + -1.6 3,561,973 + +3.0 3,561,973 + +0.6 3,561,981 - -0.3 3,561,981 - +0.7 3,561,981 - +3.0 3,561,981 - -0.6 3,561,981 - -1.0 3,561,981 - -0.3 3,561,981 - +0.8 3,561,981 - +2.4 3,561,981 - +2.5 3,561,981 - +0.3 3,561,981 - +2.1 3,561,981 - -0.9 3,561,981 - +0.7 3,561,981 - +2.5 3,561,998 - +0.9 3,562,055 - -0.0
Or see this region's nucleotide sequence